View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10905_low_1 (Length: 473)
Name: NF10905_low_1
Description: NF10905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10905_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 456
Target Start/End: Original strand, 42620540 - 42621007
Alignment:
| Q |
12 |
atgaatttgtcttcctctcacaacatatactattaaggataaggaaacaatta----------------agactgtaat-----tgatcgagcaaaatca |
90 |
Q |
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| T |
42620540 |
atgaatttgtcttcctctcacaacatatactattaaggataaggaaacaattatatataagagattttaagactgtaatgtaattgatcgagcaaaatca |
42620639 |
T |
|
| Q |
91 |
ctttctattggatgagccatgcatttagagatttcactcattaagaatgttgaaaaaagtgtccaatgtgtaggtatacctactacttatgagaatgaca |
190 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42620640 |
ctttctattggaggagccat----ttagagatttcactcattaagaatgttgaaaaaagtgtccaatgtgtaggtatacctactacttatgagaatgaca |
42620735 |
T |
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| Q |
191 |
acatagtctcaaagctgcacaagtaatataggtatgttacgtccacaagnnnnnnnnnnngcaattggattaataagtctcttcatacgtactccctgat |
290 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42620736 |
acgtagtctcaaagctgcacaagtaatataggtatgttacgtccacaagtttttttttttgcaattggattaataagtctcttcatacgtactccctgat |
42620835 |
T |
|
| Q |
291 |
agtgatgtaggtgt------gagagagagatggggcgaacatatgtaggtggtccaccgtgaaatcaatgaaacttccaaatctaactcttgataaaaaa |
384 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42620836 |
agtgatgtaggtgtgagagagagagagagatgggacgaacatatgtaggtggtccaccgtgaaatcaatgaaacttccaaatctaactcttgataaaact |
42620935 |
T |
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| Q |
385 |
tttgaaggatgcaagacttatatcacttgtgcatcatagaattagccgcaaattaaatgtatatttagggtt |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42620936 |
tttgaaggatgcaagacttatatcacttgtgcatcatagaattagccgcaaattaaatgtatatttagggtt |
42621007 |
T |
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