View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10905_low_10 (Length: 294)
Name: NF10905_low_10
Description: NF10905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10905_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 41074654 - 41074373
Alignment:
| Q |
1 |
acatacagacatggaattcactcgcccaagctagctagctagcaatagcatggtttt-attgaattagaaatactagttatgataagttctatgcatatg |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41074654 |
acatacagacatggaattcactcgcccaagctagctagctagcaatagtatggtttttattgaattagaaatactagttatgataagttctatgcatatg |
41074555 |
T |
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| Q |
100 |
aatgcacaaatcgatcaaacaaaatcaaatgacttaaaagcttgcaatattgtctgagatagttgtttttgttgtgtccaagtttgacttgaaagaccaa |
199 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41074554 |
aatgcacaaatcgatcaaaccaaatcaaatgacttaaaagcttgcaatattgtctgagatagttgtttttgttgtggccaagtttgacttgaaagaccat |
41074455 |
T |
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| Q |
200 |
gagtggatgtattgtcgttgacggacttctgttgagttggttctgac---tgatgaggtaccagaaaaaccaatcctcactg |
278 |
Q |
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|| |||||||||||| |||||||||||| |||| ||||||| | ||| |||||||||||||||||||||||||||||||| |
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| T |
41074454 |
gaatggatgtattgtagttgacggacttgtgttaagttggtaccgactgatgatgaggtaccagaaaaaccaatcctcactg |
41074373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 41089623 - 41089538
Alignment:
| Q |
113 |
atcaaacaaaatcaaatgacttaaaagcttgcaatattgtctgagatagttgtttttgttgtgtccaagtttgacttgaaagacca |
198 |
Q |
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||||||| |||||| |||||||||||||| ||||||||||||||| | || ||| ||||||||||||||||||| ||||||||||| |
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| T |
41089623 |
atcaaaccaaatcagatgacttaaaagctagcaatattgtctgaggtggtcgttgttgttgtgtccaagtttgatttgaaagacca |
41089538 |
T |
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