View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10905_low_14 (Length: 264)

Name: NF10905_low_14
Description: NF10905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10905_low_14
NF10905_low_14
[»] chr7 (5 HSPs)
chr7 (1-247)||(42452937-42453183)
chr7 (43-139)||(41596843-41596940)
chr7 (43-138)||(33532211-33532306)
chr7 (43-139)||(17174736-17174832)
chr7 (78-139)||(21525585-21525646)
[»] chr4 (5 HSPs)
chr4 (43-136)||(2664707-2664800)
chr4 (43-138)||(52648211-52648306)
chr4 (43-139)||(42883525-42883621)
chr4 (85-135)||(32103163-32103213)
chr4 (43-139)||(9474854-9474950)
[»] scaffold0129 (1 HSPs)
scaffold0129 (43-139)||(7455-7551)
[»] chr3 (3 HSPs)
chr3 (47-133)||(39703195-39703281)
chr3 (43-139)||(22509503-22509600)
chr3 (43-140)||(39622142-39622239)
[»] chr2 (6 HSPs)
chr2 (43-139)||(37551686-37551782)
chr2 (43-139)||(43525449-43525546)
chr2 (43-128)||(12054956-12055041)
chr2 (47-133)||(40355283-40355367)
chr2 (85-139)||(29754176-29754230)
chr2 (49-137)||(29893378-29893466)
[»] chr8 (1 HSPs)
chr8 (43-139)||(12868229-12868326)
[»] chr5 (6 HSPs)
chr5 (43-139)||(14009693-14009790)
chr5 (43-139)||(23120900-23120997)
chr5 (45-140)||(28313508-28313605)
chr5 (79-139)||(19321199-19321259)
chr5 (79-141)||(12036706-12036768)
chr5 (99-139)||(32379330-32379370)
[»] scaffold0711 (1 HSPs)
scaffold0711 (43-139)||(92-189)
[»] chr6 (3 HSPs)
chr6 (43-139)||(20431538-20431633)
chr6 (44-139)||(15667009-15667103)
chr6 (43-139)||(17912135-17912231)
[»] chr1 (4 HSPs)
chr1 (43-137)||(20256281-20256374)
chr1 (43-113)||(44316042-44316112)
chr1 (79-139)||(42677972-42678032)
chr1 (79-139)||(41946169-41946229)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 42452937 - 42453183
Alignment:
Q  1 aaagaattgaagaagacatatgttccccgtccccataccctatttgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  42452937 aaagaattgaagaagacatatgttccccgtccccataccctatttgtgcttagcgtttattacaactgaataaattatgtttacatattagagtatattt 42453036  T
Q  101 tgttggcccaccctcgatattttttctagctccgccacttgctattagtcacaaataagtgaacataggtttgatggtagtaaaaactacaaccggtcac 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42453037 tgttggcccaccctcgatattttttctagctctgccacttgctattagtcacaaataagtgaacataggtttgatggtagtaaaaactacaaccggtcac 42453136  T
Q  201 ttttatgaaagacgtaaaacaattggttaaatctgacaataacttat 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42453137 ttttatgaaagacgtaaaacaattggttaaatctgacaataacttat 42453183  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 41596843 - 41596940
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgttt-acatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    |||||| |||||||||||| ||||||||||| |||| ||| | |||||||||| |||||||||||||||||| |||||||||||||| ||||||||||    
T  41596843 tttgtgcttagcgtttatttcaactgaaaaatttatattttatatattagagtatattttgttggcccacccccgatattttttctaactccgccact 41596940  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 33532211 - 33532306
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgccac 138  Q
    |||||| ||||||||||||||||  |||||| ||||||||| |||||||||| | ||||||||||||||||   ||||||||||||||||| ||||    
T  33532211 tttgtgcttagcgtttattacaagagaaaaatttatgtttatatattagagtatgttttgttggcccaccccaaatattttttctagctccaccac 33532306  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 17174832 - 17174736
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    |||||| |||||||||||||||  ||||||  ||||||||| ||||||| || ||||||  |||||||||||| |||||||||| || |||||||||    
T  17174832 tttgtgcttagcgtttattacatatgaaaagtttatgtttatatattagggtatattttactggcccaccctcaatattttttccagatccgccact 17174736  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 21525646 - 21525585
Alignment:
Q  78 tgtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    |||||| |||||||||| ||||||| |||| ||||||||||||||||||||| | |||||||    
T  21525646 tgtttatatattagagtatattttgctggcacaccctcgatattttttctagtttcgccact 21525585  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 2664800 - 2664707
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgcc 136  Q
    |||||| ||||||| |||||||||||||||| ||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  2664800 tttgtgcttagcgtctattacaactgaaaaatttatgtttatatattagagtatattttgctggcccaccctcgatattttttctagctccgcc 2664707  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 52648306 - 52648211
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgccac 138  Q
    |||||| |||||||||||||||||||||||| ||||||||| |||||||||| ||||||| | ||||| |||||||||||||||||||||||||||    
T  52648306 tttgtgcttagcgtttattacaactgaaaaatttatgtttatatattagagtatattttgctagcccatcctcgatattttttctagctccgccac 52648211  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 42883621 - 42883525
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    |||||| |||||||||||||||||| ||||  ||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  42883621 tttgtgcttagcgtttattacaactaaaaagtttatgttcatatattagagtatattttgttggcccaccctcgatattttttctagctcagccact 42883525  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 32103213 - 32103163
Alignment:
Q  85 atattagagtttattttgttggcccaccctcgatattttttctagctccgc 135  Q
    |||||||||| ||||||| |||||||||| ||| |||||||||||||||||    
T  32103213 atattagagtatattttgctggcccacccccgacattttttctagctccgc 32103163  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 9474950 - 9474854
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    |||||||||||||||||||||||| |||||  ||||  ||| |||||| | | ||||||| ||  ||| || |||||||||||| | ||||||||||    
T  9474950 tttgtgtttagcgtttattacaacagaaaagtttataattatatattaaaatatattttgctgatccatccgcgatattttttcaaactccgccact 9474854  T

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Target: scaffold0129 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 7551 - 7455
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    |||||| |||||||||||||||||||||||| ||||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  7551 tttgtgcttagcgtttattacaactgaaaaatttatgtttatatattatagtatattttgctggcccaccctcgatattttttctagctccaccact 7455  T

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Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 39703195 - 39703281
Alignment:
Q  47 tgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttctagctcc 133  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  39703195 tgtttagcgtttattacaactgaaaagtttatgtttatatattagagtatattttgttagcccaccctcgatattttttctagctcc 39703281  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 22509600 - 22509503
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgttt-acatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    |||||| ||||||||||||| |||||||||| |||||||| | |||||||||| ||||||| |||||||||| |||||||||||||||||||||||||    
T  22509600 tttgtgcttagcgtttattataactgaaaaatttatgttttatatattagagtatattttgctggcccacccccgatattttttctagctccgccact 22509503  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 39622142 - 39622239
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgccactt 140  Q
    |||||| ||||||||||||||||| |||||||||||| ||| |||||||||| ||||||| | |||||||  ||||||||||||||||||||||||||    
T  39622142 tttgtgcttagcgtttattacaacagaaaaaattatgcttatatattagagtatattttgcttgcccacctccgatattttttctagctccgccactt 39622239  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 37551782 - 37551686
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    |||||| |||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| ||| |||||| ||||||||||||| |||||||    
T  37551782 tttgtgcttagcgtttattacaactgaaaaatttatgtttatatattagagtatattttgttggtccatcctcgacattttttctagcttcgccact 37551686  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 43525449 - 43525546
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgttt-acatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    |||||| |||||||||||| ||||||||||| |||| ||| | |||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  43525449 tttgtgcttagcgtttatttcaactgaaaaatttatattttatatattagagtatattttgttggcccacccccgatattttttctagctccgccact 43525546  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 12055041 - 12054956
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttcta 128  Q
    ||||||||| |||||||||||||| || ||| ||||||||| ||||  |||| ||||||| ||||||||||  |||||||||||||    
T  12055041 tttgtgtttggcgtttattacaacagacaaatttatgtttatatatccgagtatattttgctggcccacccgagatattttttcta 12054956  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 40355367 - 40355283
Alignment:
Q  47 tgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttctagctcc 133  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||| ||||||||||  |||||||  ||||| |||||||||| ||||    
T  40355367 tgtttagtgtttattacaact-aaaaaattatgtttatatattaaagtttattttactggccca-tctcgagattttttctaactcc 40355283  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 29754176 - 29754230
Alignment:
Q  85 atattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    ||||||||||| |||||||||||||||||  ||||| ||| || |||||||||||    
T  29754176 atattagagttaattttgttggcccaccccagatatatttcctggctccgccact 29754230  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 29893466 - 29893378
Alignment:
Q  49 tttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgcca 137  Q
    ||||||||| ||||||| |||||||  | | ||||  ||||| ||| |||||||||||  ||||||| | |||||||||| ||||||||    
T  29893466 tttagcgttcattacaattgaaaaatatttatttatttattatagtatattttgttggttcaccctcaacattttttctaactccgcca 29893378  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 12868326 - 12868229
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgttt-acatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    |||||| |||||||||||| ||||||||||| |||| ||| | |||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  12868326 tttgtgcttagcgtttatttcaactgaaaaatttatattttatatattagagtatattttgttggcccacccccgatattttttctagctccgccact 12868229  T

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Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 14009693 - 14009790
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgttt-acatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    |||||| |||||||||||| ||||||||||| |||| ||| | |||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  14009693 tttgtgcttagcgtttatttcaactgaaaaatttatattttatatattagagtatattttgttggcccacccccgatattttttctagctccgccact 14009790  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 23120997 - 23120900
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgttt-acatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    |||||| |||| ||||||||||||||||||| |||||||| | |||||||||| ||||||| |||||||||| |||||||||||||| ||| ||||||    
T  23120997 tttgtgcttagagtttattacaactgaaaaatttatgttttatatattagagtatattttgctggcccacccccgatattttttctacctctgccact 23120900  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 28313508 - 28313605
Alignment:
Q  45 tgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgata--ttttttctagctccgccactt 140  Q
    |||||||| |||||||||||||  ||||| ||||||||| |||||||||| ||||||| |||||||||| |||||  |||||||| ||||||||||||    
T  28313508 tgtgtttaacgtttattacaacaaaaaaatttatgtttatatattagagtatattttgctggcccacccccgatattttttttcttgctccgccactt 28313605  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 19321199 - 19321259
Alignment:
Q  79 gtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    ||||| |||||| ||| || |||| ||||||||||||||||||||||||||||||||||||    
T  19321199 gtttatatattatagtataatttgctggcccaccctcgatattttttctagctccgccact 19321259  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 12036706 - 12036768
Alignment:
Q  79 gtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgccacttg 141  Q
    ||||| |||||||||| || |||| ||| ||||||||||||||||||||||||| ||||||||    
T  12036706 gtttatatattagagtataatttgctggtccaccctcgatattttttctagctctgccacttg 12036768  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 32379370 - 32379330
Alignment:
Q  99 tttgttggcccaccctcgatattttttctagctccgccact 139  Q
    |||||| ||||||||||||||||||||||||||||| ||||    
T  32379370 tttgttagcccaccctcgatattttttctagctccgtcact 32379330  T

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Target: scaffold0711 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 92 - 189
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgttt-acatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    |||||| |||||||||||| ||||||||||| |||| ||| | |||||||||| ||||||||||||||| || |||||||||||||||||||| ||||    
T  92 tttgtgcttagcgtttatttcaactgaaaaatttatattttatatattagagtatattttgttggcccaaccccgatattttttctagctccgtcact 189  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 20431633 - 20431538
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    ||||||||||||||||||||||||  |||   ||||||||| |||||||||| ||||||| ||| |||||| ||||||||||| |||||||||||||    
T  20431633 tttgtgtttagcgtttattacaacataaagt-ttatgtttatatattagagtatattttgctggtccacccacgatattttttatagctccgccact 20431538  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 139
Target Start/End: Complemental strand, 15667103 - 15667009
Alignment:
Q  44 ttgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    ||||| ||||| ||||||||||| ||||||  |||||||| |||||||||| ||||||| ||| |||||| | |||||||||||||||||||||||    
T  15667103 ttgtgcttagcatttattacaacagaaaaatgtatgtttatatattagagtatattttgctggtccaccc-ctatattttttctagctccgccact 15667009  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 17912231 - 17912135
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    |||||| |||||||||||||||  ||||||  |||| |||| |||||| | | ||||||  ||||||||||||||||||||||| ||||||||||||    
T  17912231 tttgtgattagcgtttattacatatgaaaagtttatatttatatattacaatatattttactggcccaccctcgatattttttccagctccgccact 17912135  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 20256374 - 20256281
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgcca 137  Q
    ||||||||||||||||||||||||  ||||| ||||||||| |||||||||||||||||  |||| |||||   |||||||| ||||||||||||    
T  20256374 tttgtgtttagcgtttattacaaca-aaaaatttatgtttatatattagagtttattttactggcacacccaaaatatttttcctagctccgcca 20256281  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 44316112 - 44316042
Alignment:
Q  43 tttgtgtttagcgtttattacaactgaaaaaattatgtttacatattagagtttattttgttggcccaccc 113  Q
    |||||||||||||||||||||||| |||||  ||||||||| |||||||||| |||||||| |||||||||    
T  44316112 tttgtgtttagcgtttattacaacagaaaagtttatgtttatatattagagtatattttgtaggcccaccc 44316042  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 42677972 - 42678032
Alignment:
Q  79 gtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    ||||| |||||||||| || |||| | ||||||||||||||||||||||||||||||||||    
T  42677972 gtttatatattagagtataatttgctagcccaccctcgatattttttctagctccgccact 42678032  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 41946169 - 41946229
Alignment:
Q  79 gtttacatattagagtttattttgttggcccaccctcgatattttttctagctccgccact 139  Q
    ||||| |||||||||| ||  ||| | ||||||||| |||||||||||||||||| |||||    
T  41946169 gtttatatattagagtataaattgctagcccacccttgatattttttctagctccaccact 41946229  T

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