View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10905_low_18 (Length: 226)
Name: NF10905_low_18
Description: NF10905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10905_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 28537280 - 28537493
Alignment:
| Q |
1 |
ttcaaataaggtgcaagttattcagagaatagtttacctgcaatttacggcttaaacctcgttgcactacccgatttccacactgcatgtcacatccaca |
100 |
Q |
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| T |
28537280 |
ttcaaataaggtgcaagttattcagagaatagtttacctgcaatttacggcttaaacctcgttgcactacccgatttccacactgcatgtcacatccaca |
28537379 |
T |
|
| Q |
101 |
tttcctccagcactcctttataaacttcctaaccaaatgcccct----tgcatggttcaggtttggtctcattcttagtcctctcaattgggcactcttt |
196 |
Q |
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| T |
28537380 |
tttcctccagcactcctttataaacttcctaaccagatgccccttgcatgcatggttcaggtttggtctcattcttagtcctctcaattgggcactcttt |
28537479 |
T |
|
| Q |
197 |
acaatacacataat |
210 |
Q |
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|||||| ||||||| |
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| T |
28537480 |
acaatatacataat |
28537493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 35687073 - 35687254
Alignment:
| Q |
29 |
atagtttacctgcaatttacggcttaaacctcgttgcactacccgatttccacactgcatgtcacatccacatttcctccagcactcctttataaacttc |
128 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35687073 |
atagtgtacctgcaatttacggcttaaacctcgttgcactacccgatttccacactgcatgtcacatccacatttcctccagcactcctttataaacttc |
35687172 |
T |
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| Q |
129 |
ctaaccaaatgccccttgcatggttcaggtttggtctcattcttagtcctctcaattgggcactctttacaatacacataat |
210 |
Q |
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| T |
35687173 |
ctaaccagatgtcccttgcatgattcaggtttggtctcattcttggtcctctcaattgggcactccttacaaaacacataat |
35687254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 40 - 207
Target Start/End: Complemental strand, 44972524 - 44972357
Alignment:
| Q |
40 |
gcaatttacggcttaaacctcgttgcactacccgatttccacactgcatgtcacatccacatttcctccagcactcctttataaacttcctaaccaaatg |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44972524 |
gcaatttacggcttaaacctcgttgcactacccgatttccacactgcatcacacatccacatttcctccagcactcctttataaacttcctaaccagatg |
44972425 |
T |
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| Q |
140 |
ccccttgcatggttcaggtttggtctcattcttagtcctctcaattgggcactctttacaatacacat |
207 |
Q |
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| T |
44972424 |
tcccttgcatggttcaggtttggtctcattcttagtcctctcaattgggcactctttacaatacacat |
44972357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 176
Target Start/End: Original strand, 7723503 - 7723677
Alignment:
| Q |
2 |
tcaaataaggtgcaagttattcagagaatagtttacctgcaatttacggcttaaacctcgttgcactacccgatttccacactgcatgtcacatccacat |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7723503 |
tcaaataaggtgcaagttattcagagaatagttcacctatgatttacggcttaaacctcattgcactacccgatttccacactgcatgtcacatccacat |
7723602 |
T |
|
| Q |
102 |
ttcctccagcactcctttataaacttcctaaccaaatgccccttgcatggttcaggtttggtctcattcttagtc |
176 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| |
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| T |
7723603 |
ttcctccagcactcctttataaacttcctaaccagatgtcccttgcatggttcaggtttggtctcaatcttagtc |
7723677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 7723917 - 7723955
Alignment:
| Q |
172 |
tagtcctctcaattgggcactctttacaatacacataat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
7723917 |
tagtcctctcaattgggcactctttacaatacacataat |
7723955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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