View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10905_low_4 (Length: 387)
Name: NF10905_low_4
Description: NF10905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10905_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 214 - 377
Target Start/End: Complemental strand, 10935727 - 10935564
Alignment:
| Q |
214 |
taacacattggccaaatgaatgactatagtatttgtatcttttcaacaacattacctgtcttttatacgaatcagaacctttccagcttcttctcgtgct |
313 |
Q |
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| T |
10935727 |
taacacattggccaaatgaatgactatagtatttgtatcttttcaacaacattacctgtctttcatacgaatcagaacctttccagcttcttctcgtgct |
10935628 |
T |
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| Q |
314 |
ttattcaccaccaattctctagcgtattctctcaagtcttgttgcattttttcaacagtttctt |
377 |
Q |
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| T |
10935627 |
ttattcaccaccaattctctagcgtattctctcaagtcttgttgcattttttcaacagtttctt |
10935564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 27 - 379
Target Start/End: Complemental strand, 10960456 - 10960099
Alignment:
| Q |
27 |
aagtagggctgatttgggaatttaattggacagagccagggcctctcaaataccctcagaagtagtatccgatataacacaacaaatctatggattactt |
126 |
Q |
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| T |
10960456 |
aagtagggcagatttggcatcttaattggagagagtcagggtctctcaaagatcatcag--gtagcatccgttataacaccaaaaacctttggatcacat |
10960359 |
T |
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| Q |
127 |
taaacttttgagtaatatatatttttacgctgttgcaa-------ccataatatgttacatgatccgatctttactttgttaatgtttcggctataacac |
219 |
Q |
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| T |
10960358 |
taaactgttgagtaatagatacctttacactgttgcaagttgcaaccataatatgttgcatgttccaaactttactttgttaacggttgggtttaaacac |
10960259 |
T |
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| Q |
220 |
attggccaaatgaatgactatagtatttgtatcttttcaacaacattacctgtcttttatacgaatcagaacctttccagcttcttctcgtgctttattc |
319 |
Q |
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| T |
10960258 |
attggccaaatgaatgactatagtatagatatcttttcaacaacattacctatctttcatgcgaatcagaacctttccagcttcttctcgcgctttattt |
10960159 |
T |
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| Q |
320 |
accaccaattctctagcgtattctctcaagtcttgttgcattttttcaacagtttcttct |
379 |
Q |
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| T |
10960158 |
tccaccaattttctagcgtagtctcttaagctttgttgcattttttcaacagtttcttct |
10960099 |
T |
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