View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10905_low_5 (Length: 381)
Name: NF10905_low_5
Description: NF10905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10905_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 114 - 364
Target Start/End: Complemental strand, 36588493 - 36588243
Alignment:
| Q |
114 |
ggcacgtggcgtctcacctttaacgtccgtaacggtaataacaaactctccgttaactataacgctctccgttcttcaatcttctatcactctaactaca |
213 |
Q |
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| T |
36588493 |
ggcacgtggcgtctcacctttaacgtccgcaacggtaataacaaactctccgttaactataacgctctccgttcttcaatcttctatcactctaactaca |
36588394 |
T |
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| Q |
214 |
tcgctgaatccaatcttgctccgtttaaaatggacacgaaatctgaagcgaatcttaatgctactttttctgctgttaacgcttatcttgattcgcgtgt |
313 |
Q |
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| T |
36588393 |
tcgctgaatccaatcttgctccgtttaaaatggacacgaaatctgaagcgaatcttaatgctactttttctgctgttaacgcttatcttgattcgcgtgt |
36588294 |
T |
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| Q |
314 |
ggttgacgctcttaatggtgatagatcaaaaggttctgttccgtttgatgt |
364 |
Q |
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| T |
36588293 |
ggttgacgctcttaatggtgatagatcaaaaggttctgttccgtttgatgt |
36588243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 190 - 364
Target Start/End: Original strand, 25613149 - 25613327
Alignment:
| Q |
190 |
caatcttctatcactctaactacatcgctgaatccaatcttgctccgtttaaaatggacacgaaatctgaagcgaatcttaatgctactttttctgctgt |
289 |
Q |
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| T |
25613149 |
caatcttctatcattcaaactacatcgctaaatcgaatcttgctcggtttaaaatggacatgaaatctgaagcgaatcttaacgcaactttttcttttgt |
25613248 |
T |
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| Q |
290 |
taacgcttatcttgat----tcgcgtgtggttgacgctcttaatggtgatagatcaaaaggttctgttccgtttgatgt |
364 |
Q |
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| T |
25613249 |
taacgcgtatcttgattgaatcgtgtgtggttaattctcatcaaggtgatagatcaaaaggttatgttccgtttgatgt |
25613327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 190 - 355
Target Start/End: Original strand, 50861017 - 50861181
Alignment:
| Q |
190 |
caatcttctatcactctaactacatcgctgaatccaatcttgctccgtttaaaatggacacgaaatctgaagcgaatcttaatgctactttttctgctgt |
289 |
Q |
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| T |
50861017 |
caatcttctatcattcaaactacatctctgaatcgaa-cttgctccatttaaaatggacacaaaattagaatcgaatcttaacgcaattttttctactgt |
50861115 |
T |
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| Q |
290 |
taacgcttatcttgattcgcgtgtggttgacgctcttaatggtgatagatcaaaaggttctgttcc |
355 |
Q |
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| T |
50861116 |
taacatgtatcttgaatcgcgtgtggttaacgctattaatggtgatagatcaaaaggttctgttcc |
50861181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 364
Target Start/End: Complemental strand, 39073997 - 39073889
Alignment:
| Q |
256 |
ctgaagcgaatcttaatgctactttttctgctgttaacgcttatcttgattcgcgtgtggttgacgctcttaatggtgatagatcaaaaggttctgttcc |
355 |
Q |
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| T |
39073997 |
ctgaaccgaatctaaacgcgactttttctgttgtcaacgcgtatcttgaatcgtgtgtggttaacaatcttaatggaaatagatcaaaaggttctgttcc |
39073898 |
T |
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| Q |
356 |
gtttgatgt |
364 |
Q |
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| T |
39073897 |
gtttgatgt |
39073889 |
T |
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