View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10906_low_2 (Length: 443)
Name: NF10906_low_2
Description: NF10906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10906_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 27762070 - 27761773
Alignment:
| Q |
7 |
aacagcagatattattacattgaatgagtgcaagacgcatcaaaacatttgcgaaagccaaagaccaaaaacata-aaggtgttatatatatgcggcaca |
105 |
Q |
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| T |
27762070 |
aacagcagatattattacattgaatgagtgcacgacgcatcaaaacatttgcaaaagccaaagaccaaaa-catagaaggtgttatgtatatgcggcaca |
27761972 |
T |
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| Q |
106 |
tctgatacaacccaacaaaaaccaccccaactcctccaagctaaaacagcgacaaagccacacagcaagaagccaaaccaaaggaaaggagcctgatgtt |
205 |
Q |
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| T |
27761971 |
tatgatacaacccaacaaaaatcaccccaact-------------------acaaagccgcacagcaagaagccaaaccaaaggaaaggagcctgatgct |
27761891 |
T |
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| Q |
206 |
gaaggtatacgagggcgaaagtccaaaacagaagtgcaaaaccaaattgtctctaaaaatagtctacccgcgaatacatctacatcaacgccagctagga |
305 |
Q |
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| T |
27761890 |
gaaggtatacgagggcgaaagaccaaaacagaagtgcaaaaccaaattgtctctaaaaatagtctacccgcaaatacatctacatcaacaccagctagga |
27761791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 328 - 436
Target Start/End: Complemental strand, 27756841 - 27756733
Alignment:
| Q |
328 |
ttagctaccattgaaccattcagttacaagtgcactaaagattgtgtatacaagggaacaagaacgaagaaaatctgcacaactgagttctttaaatcca |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27756841 |
ttagctaccattgaaccattcagttacaagtgcactaaagattgtgtatacaagggaacaagaacgaagaaaatctgcacaactgagttctttaaatcca |
27756742 |
T |
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| Q |
428 |
tctgtgctg |
436 |
Q |
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| T |
27756741 |
tctgtgctg |
27756733 |
T |
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