View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10906_low_4 (Length: 297)

Name: NF10906_low_4
Description: NF10906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10906_low_4
NF10906_low_4
[»] chr2 (2 HSPs)
chr2 (17-287)||(2037783-2038053)
chr2 (21-78)||(29464176-29464233)
[»] chr8 (2 HSPs)
chr8 (17-272)||(6816681-6816934)
chr8 (34-258)||(44667503-44667727)
[»] chr6 (2 HSPs)
chr6 (17-273)||(34518796-34519042)
chr6 (93-197)||(21508335-21508435)
[»] chr4 (1 HSPs)
chr4 (21-255)||(28657518-28657755)
[»] chr7 (4 HSPs)
chr7 (21-178)||(28382427-28382596)
chr7 (113-254)||(28387029-28387170)
chr7 (162-254)||(28382724-28382816)
chr7 (21-100)||(28386895-28386978)
[»] scaffold0001 (8 HSPs)
scaffold0001 (75-150)||(24453-24524)
scaffold0001 (75-150)||(27951-28022)
scaffold0001 (67-139)||(14541-14609)
scaffold0001 (67-139)||(16031-16099)
scaffold0001 (67-139)||(17523-17591)
scaffold0001 (67-139)||(19013-19081)
scaffold0001 (67-139)||(20505-20574)
scaffold0001 (67-139)||(13021-13089)
[»] scaffold0292 (1 HSPs)
scaffold0292 (67-115)||(21352-21400)


Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 2037783 - 2038053
Alignment:
Q  17 actttatgaatatgtagtttattatattagagtaggaaaaattggtgtcatttattaagttactaacttagttttattataattgtttctagttttatgc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2037783 actttatgaatatgtagtttattatattagagtaggaaaaattggtgtcatttattaagttactaacttaattttattataattgtttctagttttatgc 2037882  T
Q  117 tagttactagttaggaagcacacaatcatgtttattcattactagaaagtaggagatacaacctcttccatgttcatatgatcatgacacaccactttcc 216  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||    
T  2037883 tagttactagttaggaagcacacgatcatgtttatttattactagaaagtataagatacaacttcttccatgttcatatgatcatgacacaccactttcc 2037982  T
Q  217 accccatgatttagttccacatttttagcaaggaagttagtgagtgagagagttattcggttcctattctt 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2037983 accccatgatttagttccacatttttagcaaggaagttagtgagtgagagagttattcggttcctattctt 2038053  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 29464176 - 29464233
Alignment:
Q  21 tatgaatatgtagtttattatattagagtaggaaaaattggtgtcatttattaagtta 78  Q
    ||||||||| || ||||||||||||| ||||||||||| |||| |||||| |||||||    
T  29464176 tatgaatatttactttattatattagggtaggaaaaataggtgacatttagtaagtta 29464233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 6816681 - 6816934
Alignment:
Q  17 actttatgaatatgtagtttattatattagagtaggaaaaattggtgtcatttattaagttactaacttagttttattataattgtttctagttttatgc 116  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6816681 actttatgaatatatagtttattatattagagtaggaaaaattggtgacatttattaagttactaacttagttttattataattgtttctagttttatgc 6816780  T
Q  117 tagttactagttaggaagcacacaatcatgtttattcattactagaaagtaggagatacaacctcttccatgttcatatgatcatgacacaccactttcc 216  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||  |||||   |||||||||| ||||||||||||||||||    
T  6816781 tagttactagttaggaagcacatgatcatgtttattcattactagaaagtaggagatacaatttcttc--ggttcatatgaccatgacacaccactttcc 6816878  T
Q  217 accccatgatttagttccacatttttagcaaggaagttagtgagtgagagagttat 272  Q
    || |||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  6816879 actccatgaattagttccacatttttagcaaggaaggtagtgagtgagagagttat 6816934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 258
Target Start/End: Original strand, 44667503 - 44667727
Alignment:
Q  34 tttattatattagagtaggaaaaattggtgtcatttattaagttactaacttagttttattataattgtttctagttttatgctagttactagttaggaa 133  Q
    ||||||||||||| ||||| ||||| |||| |||||||||||||||| |  ||||||||||||||||||||||| |||||||||| ||||  ||||||||    
T  44667503 tttattatattagggtaggtaaaatgggtgacatttattaagttactgatgtagttttattataattgtttctaattttatgctatttaccggttaggaa 44667602  T
Q  134 gcacacaatcatgtttattcattactagaaagtaggagatacaacctcttccatgttcatatgatcatgacacaccactttccaccccatgatttagttc 233  Q
    ||||||| |||| || ||||||||||||||||||||||||||||| |||||| |||| |||||| |||||||||||||||||||| ||||||||||||||    
T  44667603 gcacacactcattttcattcattactagaaagtaggagatacaacttcttccctgtttatatgaccatgacacaccactttccactccatgatttagttc 44667702  T
Q  234 cacatttttagcaaggaagttagtg 258  Q
    ||||||||||| |||  ||||||||    
T  44667703 cacatttttaggaagagagttagtg 44667727  T

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Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 34519042 - 34518796
Alignment:
Q  17 actttatgaatatgtagtttattatattagagtaggaaaaattggtgtcatttattaagttactaacttagttttattataattgtttctagttttatgc 116  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  34519042 actttatgaatatatagtttattatattagattaggaaaaattggtgacatttattaagttactaacttagttttattataattgtttctag-tttatgt 34518944  T
Q  117 tagttactagttaggaagcacacaatcatgtttattcattactagaaagtaggagatacaacctcttccatgttcatatgatcatgacacaccactttcc 216  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||          ||||||||| ||||||||||||||||||    
T  34518943 tagttactagttaggaagcacacgatcatatttattcattactagaaagtaggagatacaac---------tttcatatgaccatgacacaccactttcc 34518853  T
Q  217 accccatgatttagttccacatttttagcaaggaagttagtgagtgagagagttatt 273  Q
    || ||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  34518852 actccatgatttagttccacatttttagcaaggaagttagcgagtgaaagagttatt 34518796  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 21508335 - 21508435
Alignment:
Q  93 ttataattgtttctagttttatgctagttactagttaggaagcacacaatcatgtttattcattactagaaagtaggagatacaacctcttccatgttca 192  Q
    |||||||||||| |  ||||||||||  ||||||||||||| || ||   ||||||    |||||||| ||||||||||||||||| |||||| | ||||    
T  21508335 ttataattgtttttgattttatgctacctactagttaggaaacatacgtccatgtt----cattactaaaaagtaggagatacaacttcttccctattca 21508430  T
Q  193 tatga 197  Q
    |||||    
T  21508431 tatga 21508435  T

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Target: chr4 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 28657755 - 28657518
Alignment:
Q  21 tatgaatatgtagtttattatattagagtaggaaaaattggtgtcatttattaagttactaacttagttttattataattgtttctagttttatgctagt 120  Q
    |||| |||| || ||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28657755 tatggatatttactttattatattagagtaggaaaa-tgggtgacatttattaagttactaacttagttttattataattgtttctagttttatgctagt 28657657  T
Q  121 tactagttaggaagcacacaatcatg----tttattcattactagaaagtaggagatacaacctcttccatgttcatatgatcatgacacaccactttcc 216  Q
    |||||||||||||| ||||  |||||    || ||||| ||||||||||||||||||||| | |||||| | ||||||||| || |||||||||||||||    
T  28657656 tactagttaggaagaacacggtcatgatcattcattcactactagaaagtaggagatacagcttcttccttattcatatgaccacgacacaccactttcc 28657557  T
Q  217 accccatgatttagttccacatttttagcaaggaagtta 255  Q
    || ||||||||||||||||| ||||||| || |||||||    
T  28657556 actccatgatttagttccacttttttaggaaagaagtta 28657518  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 28382427 - 28382596
Alignment:
Q  21 tatgaatatgtagtttattatattag---agtagg--aaaaattggtgtcatttattaagttactaacttagttttattataatt-------gtttctag 108  Q
    ||||||||| |||||||||||||||    ||||||  |||||| ||||||||||| ||||||||||||||||||||| |||||||       |||| |||    
T  28382427 tatgaatatttagtttattatattattatagtagggaaaaaatgggtgtcatttaataagttactaacttagttttactataattatatattgtttatag 28382526  T
Q  109 ttttatgctagttactagttaggaagcacacaatcatgtttattcattactagaaagtaggagatacaac 178  Q
    |||||||||||| ||||||||| ||||||||  |||||||  |||| || ||||||||||||||||||||    
T  28382527 ttttatgctagtcactagttagaaagcacacgttcatgttccttcaatattagaaagtaggagatacaac 28382596  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 113 - 254
Target Start/End: Original strand, 28387029 - 28387170
Alignment:
Q  113 atgctagttactagttaggaagcacacaatcatgtttattcattactagaaagtaggagatacaacctcttccatgttcatatgatcatgacacaccact 212  Q
    ||||||||  |||||||| ||||||||  ||||||| ||||  ||||||||||||| ||||||||| |||||| | ||||||||| | ||||||| ||||    
T  28387029 atgctagtcgctagttagaaagcacacgttcatgttcattccatactagaaagtagtagatacaacttcttccttattcatatgaccgtgacacatcact 28387128  T
Q  213 ttccaccccatgatttagttccacatttttagcaaggaagtt 254  Q
    |||||| ||||||||||||||||   |||||| |||||||||    
T  28387129 ttccactccatgatttagttccattattttaggaaggaagtt 28387170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 28382724 - 28382816
Alignment:
Q  162 aaagtaggagatacaacctcttccatgttcatatgatcatgacacaccactttccaccccatgatttagttccacatttttagcaaggaagtt 254  Q
    ||||||||||||||||| |||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||  |||||| |||||||||    
T  28382724 aaagtaggagatacaacttcttccctgttcatatgaccgtgacacaccactttccactccatgatttagttccactattttaggaaggaagtt 28382816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 28386895 - 28386978
Alignment:
Q  21 tatgaatatgtagtttattatattag---agtaggaaaaattgg-tgtcatttattaagttactaacttagttttattataatt 100  Q
    ||||||||| |||||||||||||||    ||||||||||| ||| |||||||||||||||||||| |||||||||| |||||||    
T  28386895 tatgaatatttagtttattatattattatagtaggaaaaaatgggtgtcatttattaagttactatcttagttttactataatt 28386978  T

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Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 24453 - 24524
Alignment:
Q  75 gttactaacttagttttattataattgtttctagttttatgctagttactagttaggaagcacacaatcatgttta 150  Q
    ||||||||| |||||||| |||||||||||||||||||||    |||||||||||||||||||||| | |||||||    
T  24453 gttactaacatagttttaatataattgtttctagttttat----gttactagttaggaagcacacatttatgttta 24524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 27951 - 28022
Alignment:
Q  75 gttactaacttagttttattataattgtttctagttttatgctagttactagttaggaagcacacaatcatgttta 150  Q
    ||||||||| |||||||| |||||||||||||||||||||    |||||||||||||||||||||| | |||||||    
T  27951 gttactaacatagttttaatataattgtttctagttttat----gttactagttaggaagcacacatttatgttta 28022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 14541 - 14609
Alignment:
Q  67 tttattaagttactaacttagttttattataattgtttctagttttatgctagttactagttaggaagcacac 139  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||| ||    ||||| |||||||||||||||    
T  14541 tttataaagttactaacatagttttattataattgtttctagtttgat----gttacaagttaggaagcacac 14609  T

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Target: scaffold0001; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 16031 - 16099
Alignment:
Q  67 tttattaagttactaacttagttttattataattgtttctagttttatgctagttactagttaggaagcacac 139  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||| ||    ||||| |||||||||||||||    
T  16031 tttataaagttactaacatagttttattataattgtttctagtttgat----gttacaagttaggaagcacac 16099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 17523 - 17591
Alignment:
Q  67 tttattaagttactaacttagttttattataattgtttctagttttatgctagttactagttaggaagcacac 139  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||| ||    ||||| |||||||||||||||    
T  17523 tttataaagttactaacatagttttattataattgtttctagtttgat----gttacaagttaggaagcacac 17591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 19013 - 19081
Alignment:
Q  67 tttattaagttactaacttagttttattataattgtttctagttttatgctagttactagttaggaagcacac 139  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||| ||    ||||| |||||||||||||||    
T  19013 tttataaagttactaacatagttttattataattgtttctagtttgat----gttacaagttaggaagcacac 19081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 20505 - 20574
Alignment:
Q  67 tttattaagttactaacttagttttattataattgtttctagttttatgctagttactagttaggaagcacac 139  Q
    ||||| |||||| |||| ||||||||||||||||||||||||||||||| || |   ||||||||||||||||    
T  20505 tttataaagttattaacatagttttattataattgtttctagttttatgttact---tagttaggaagcacac 20574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 13021 - 13089
Alignment:
Q  67 tttattaagttactaacttagttttattataattgtttctagttttatgctagttactagttaggaagcacac 139  Q
    ||||| ||||||  ||| |||||||||||||||||||||||||||||    ||||||||||||  ||||||||    
T  13021 tttataaagttaaaaacatagttttattataattgtttctagtttta----agttactagttaaaaagcacac 13089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0292 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 21352 - 21400
Alignment:
Q  67 tttattaagttactaacttagttttattataattgtttctagttttatg 115  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||||||||    
T  21352 tttataaagttactaacatagttttattataattgtttttagttttatg 21400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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