View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10907_high_5 (Length: 345)
Name: NF10907_high_5
Description: NF10907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10907_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 97 - 340
Target Start/End: Complemental strand, 48159204 - 48158961
Alignment:
| Q |
97 |
ttgccaattgttagtagaagagattaaactctaaaccacctacatatacctctttaggtgtccccgcctatgccgccattgagctactcctccgatacag |
196 |
Q |
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| T |
48159204 |
ttgccaaatgttagtagcagatattcaactctaaaccacctacatataactctttaggtgtccctgcctatgccgccattgagctactcctccgatacag |
48159105 |
T |
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| Q |
197 |
atataagtgtttgtttggttccacttgtagaattatggaggtttgtaattgattctcagatgtttggttgctttccaatagaattgattcgatttgaagt |
296 |
Q |
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| T |
48159104 |
atataagtgtttgtttggttccacttgtagaattatggaggtttgtaattgattctcagatgtttggttgctttccagtagaattgattcgatttgaagt |
48159005 |
T |
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| Q |
297 |
tacatggatgcacacaaacataatcattttaccttcatctcact |
340 |
Q |
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| T |
48159004 |
tacatgaatgcacacaaacataatcattttaccttcaactcact |
48158961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 48159313 - 48159231
Alignment:
| Q |
1 |
atgattgttccatcagctgatgcttgtgatgcactcaaaccttgtgcttgtttgcgcaaggaatgcaggtatgctcctatacc |
83 |
Q |
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| T |
48159313 |
atgattgttccatcagctgatgctgttgatgcactcaaaacttgtgcttgtttgctcaaggaatgcaggtatgctgctatacc |
48159231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 17111820 - 17111872
Alignment:
| Q |
243 |
aattgattctcagatgtttggttgctttccaatagaattgattcgatttgaag |
295 |
Q |
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| T |
17111820 |
aattgattctgacatgtttggttgctttcgagtagaattgattctacttgaag |
17111872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 15677938 - 15677886
Alignment:
| Q |
243 |
aattgattctcagatgtttggttgctttccaatagaattgattcgatttgaag |
295 |
Q |
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| T |
15677938 |
aattgattctgacatgtttggttgctttcaaatagaattgattctacttgaag |
15677886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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