View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10907_high_9 (Length: 249)
Name: NF10907_high_9
Description: NF10907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10907_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 56231334 - 56231559
Alignment:
| Q |
14 |
agatagagattttgatgctagtgttcaactccataatggacaacactttagggtattatccaatttttcttcttgt---gacataccattaattaaccaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
56231334 |
agatagagattttgatgctagtgttcaactccataatggacaacactttagggtattatccaatttttcttcttcttttgacataccattaattaaccaa |
56231433 |
T |
|
| Q |
111 |
gtc---aagttttccattttcttctctaatatttccattactgattgattatcagggagatagcctttctatagctttgccagaaaacaagctttatccc |
207 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56231434 |
gtcgtcaagttttccattttcttctctaatatttccattactgattgattatcagggagatagcctttctatagctttgccagaaaacaagctttatccc |
56231533 |
T |
|
| Q |
208 |
ctcattactgctgctgaggcaagatt |
233 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
56231534 |
ctcattactgctgctgaggcaagatt |
56231559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 39189060 - 39189292
Alignment:
| Q |
14 |
agatagagattttgatgctagtgttcaactccataatggacaacactttagggtattatccaatttttcttc---ttgtgacataccattaattaac-ca |
109 |
Q |
| |
|
||||||||| |||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| || || |
|
|
| T |
39189060 |
agatagagagtttgatactgttgttcaactccataatggacaacactttaaggtattatccaatttttcttcatcttgtgacataccattaataaagtca |
39189159 |
T |
|
| Q |
110 |
agt----caagttttc---------cattttcttctctaatatttccattactgattgattatcagggagatagcctttctatagctttgccagaaaaca |
196 |
Q |
| |
|
||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
39189160 |
agtttttcattttttctatcacttccattttcttctctaatatttccattatcgattgattatcagggagctagcctttctacagctttgccagaaaaca |
39189259 |
T |
|
| Q |
197 |
agctttatcccctcattactgctgctgaggcaa |
229 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
39189260 |
agctttatccactcattactgctgctgaggcaa |
39189292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University