View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10907_low_11 (Length: 239)
Name: NF10907_low_11
Description: NF10907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10907_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 59 - 223
Target Start/End: Original strand, 48159489 - 48159653
Alignment:
| Q |
59 |
ccgtggtatgtttgaagaagaatctggtttccctttgtggaggtggtgttgacattggcatgccaccaaaccatgagaattacgatcatgtcttaagaaa |
158 |
Q |
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| T |
48159489 |
ccgtgatatgtttgaagaagaatctggtttccctttgtggtggtggtgttgacattggcataccaccaaaccacgagaattacgatcatgtcttaagaaa |
48159588 |
T |
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| Q |
159 |
tgcaatcgtgtaggcaatactttgaacactgccaaccttgttgttgttgttcggcgaaatcttat |
223 |
Q |
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| T |
48159589 |
tgcaatcgtgtaggcaatactttgaacactgccaaccttgttgttgttgttcggcgaaatcttat |
48159653 |
T |
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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 48159435 - 48159466
Alignment:
| Q |
1 |
tttcactatgagaaatacaaagaatgaataaa |
32 |
Q |
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| T |
48159435 |
tttcactatgagaaatacaaagaatgaataaa |
48159466 |
T |
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