View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10907_low_13 (Length: 204)
Name: NF10907_low_13
Description: NF10907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10907_low_13 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 36263863 - 36263660
Alignment:
| Q |
1 |
tgaagactgaggatgaaaactacctcactcttgccaataacacctatgagtcactcacaacatgtcaggctcttgatgctcagaatatatatggactcac |
100 |
Q |
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| T |
36263863 |
tgaagactgaggatgaaaactacttcactcttgccaataacacctatgagtcactcacaacatgtcaggctcttgatgctcagaatatatatggactcac |
36263764 |
T |
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| Q |
101 |
aaacctcactgcagggctcaatatgcatgttccactcaggtgtgcttgtcctacctccaagcaaattgaaaatggattcaagtatattcttacatacctg |
200 |
Q |
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| T |
36263763 |
aaacctcactgcagggctcaatatgcatgttccactcaggtgtgcttgtcctacctccaagcaaattgaaaatggattcaagtatattcttacatacctg |
36263664 |
T |
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| Q |
201 |
gtct |
204 |
Q |
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|||| |
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| T |
36263663 |
gtct |
36263660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 36256041 - 36255950
Alignment:
| Q |
115 |
ggctcaatatgcatgttccactcagg--tgtgcttgtcctacctccaagcaaattgaaaatggattcaagtatattcttacatacctggtct |
204 |
Q |
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| T |
36256041 |
ggctcaatttgcatgttccactcaggggtgtgcttggtccatctccaagcaaatggaaaatggattcaagtatcttcttgcatacttggtct |
36255950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 36256100 - 36256049
Alignment:
| Q |
1 |
tgaagactgaggatgaaaacta--cctcactcttgccaataacacctatgag |
50 |
Q |
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|||| ||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
36256100 |
tgaaaactgaggatgaaaactatacttcactcttgccaataacacctatgag |
36256049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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