View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10907_low_2 (Length: 406)
Name: NF10907_low_2
Description: NF10907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10907_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 10186750 - 10186579
Alignment:
| Q |
1 |
ccacacactgtcaaattgtctgtacagctgctcagttgtctgctttgttctgcaatcgccaatcaaccatctcagtcactccttttaagtgtcgagctag |
100 |
Q |
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| T |
10186750 |
ccacacactgtcaaattgtctgtacagctgctcagttgtctgctttgttctgcaatcgccaatcaaccatctcagtcgctccttttaagtgtcgagctag |
10186651 |
T |
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| Q |
101 |
ccttgacatacagtggtatgtctcagcctattaatggataacttcaaaagcttagtgtgacataaaacaaga |
172 |
Q |
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| T |
10186650 |
ccttgacatacagtggtatgtctcagcctattaatggataacttcaaaagcttaatgtgacataaaacaaga |
10186579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 239 - 397
Target Start/End: Complemental strand, 10186512 - 10186355
Alignment:
| Q |
239 |
cagacttctggaattccgggtttctacaaccaccaacgacatgaatcagacagagcagacgataaaatatataagtgggaggaacgaaaaagctaggaaa |
338 |
Q |
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| T |
10186512 |
cagacttctggaattccgggtttctacaaccaccaacgacatgaatcagacagagcagatgataaaatatataagtgggaggaacg-aaaagctaggaaa |
10186414 |
T |
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| Q |
339 |
taatcaacagggcaggcttttttatgtccaagcatgaaattttagatctattcgttcat |
397 |
Q |
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| T |
10186413 |
taatcaacagggcaggcttttttatgtccaagcatgaaattttagatctattcgttcat |
10186355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 28931890 - 28931759
Alignment:
| Q |
11 |
tcaaattgtctgtacagctgctcagttgtctgctttgttctgcaatcgccaatcaaccatctcagtcactccttttaagtgtcgagctagccttgacata |
110 |
Q |
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| T |
28931890 |
tcaaattgtctgtaaagctgctcagttgtctgctttgttctgcattcgccaatcaaccatctcaggcac--------agtttcgagctagccttgacata |
28931799 |
T |
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| Q |
111 |
cagtggtatgtctcagcctattaatggataacttcaaaag |
150 |
Q |
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| T |
28931798 |
cagtggtatgtctcagcctattaatgaatatcttcaaaag |
28931759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 397
Target Start/End: Complemental strand, 28931650 - 28931501
Alignment:
| Q |
247 |
tggaattccgggtttctacaaccaccaacgacatgaatcagacagagcagacgataaaatatataagtgggaggaacgaaaaagctaggaaataatcaac |
346 |
Q |
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|||||||| ||||| ||||||| ||||| |||| |||||| ||| ||||||| ||||||| |||||||| |||||| ||||| ||| |||| || |||| |
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| T |
28931650 |
tggaattctgggttcctacaacgaccaatgacaagaatcaaacatagcagacaataaaatctataagtgagaggaaagaaaac-ctaagaaaaaaacaac |
28931552 |
T |
|
| Q |
347 |
agggcaggcttttttatgtccaagcatgaaattttagatctattcgttcat |
397 |
Q |
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|| ||| ||||||| ||||| ||||||||| |||||||||||| ||||| |
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| T |
28931551 |
agagcaagctttttcatgtctgagcatgaaaggttagatctattccttcat |
28931501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 35122259 - 35122411
Alignment:
| Q |
11 |
tcaaattgtctgtacagctgctcagttgtctgctttgttctgcaatcgccaatcaaccatctcagtcactccttttaagtgtcgagctagccttgacata |
110 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
35122259 |
tcaaattgcttgtacagctgctcagttgtctgctttgttctgcattcgccaatcaaccatctcaggcactccttttaagtgttgagctagccttgacata |
35122358 |
T |
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| Q |
111 |
cagtggtatgtctcagcctattaatggataacttcaaaagcttagtgtgacat |
163 |
Q |
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|| |||||||||||||||||| |||| ||||||||||||| ||| ||| |||| |
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| T |
35122359 |
caatggtatgtctcagcctatcaatgaataacttcaaaagtttaatgttacat |
35122411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 239 - 347
Target Start/End: Original strand, 35122499 - 35122606
Alignment:
| Q |
239 |
cagacttctggaattccgggtttctacaaccaccaacgacatgaatcagacagagcagacgataaaatatataagtgggaggaacgaaaaagctaggaaa |
338 |
Q |
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||||||| |||||||| |||||||||||||||||||| ||| |||| | ||||||||| ||| | ||| ||| ||||||||||| | ||||||||||| | |
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| T |
35122499 |
cagacttttggaattctgggtttctacaaccaccaacaacaagaattaaacagagcaggcgacataatctatgagtgggaggaaag-aaaagctaggaga |
35122597 |
T |
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| Q |
339 |
taatcaaca |
347 |
Q |
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| T |
35122598 |
taatcaaca |
35122606 |
T |
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