View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10907_low_7 (Length: 282)
Name: NF10907_low_7
Description: NF10907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10907_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 118 - 272
Target Start/End: Complemental strand, 11412845 - 11412699
Alignment:
| Q |
118 |
tttttgtttaacaaatccagctacaaaactacacacaactacgctaacacttaacaaagatttaattttcattgtttttgtttaacaaacccaactacac |
217 |
Q |
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| T |
11412845 |
tttttgtttaacaaacccagctacaaaactacacacaactacgctaacacttaacaaagatttgattttcattgtttttgtttaacaaatc--------c |
11412754 |
T |
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| Q |
218 |
aactacactaacacttaacaaagatttgattttcattatttttgtttcacctatg |
272 |
Q |
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| T |
11412753 |
aactacactaacacttaacaaagatttgattttcattatttttgtttcacctatg |
11412699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 11413164 - 11413060
Alignment:
| Q |
19 |
cataatacctaatgacagccttctacaagcagacatgcattaaatgcaaaggataccaccgctcacatcgcctccaatcagacccaacacaattttctat |
118 |
Q |
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| T |
11413164 |
cataatacctaatgtcagtcttctacaagcagacatgcattaaatgcaaaggataccaccactcacatcgcctccaatcagtcctaacacaatttgctat |
11413065 |
T |
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| Q |
119 |
ttttg |
123 |
Q |
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||||| |
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| T |
11413064 |
ttttg |
11413060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 11412855 - 11412763
Alignment:
| Q |
182 |
attttcattgtttttgtttaacaaacccaact----------acacaactacactaacacttaacaaagatttgattttcattatttttgttt |
264 |
Q |
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||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
11412855 |
attttcattgtttttgtttaacaaacccagctacaaaactacacacaactacgctaacacttaacaaagatttgattttcattgtttttgttt |
11412763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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