View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10907_low_8 (Length: 275)

Name: NF10907_low_8
Description: NF10907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10907_low_8
NF10907_low_8
[»] chr6 (7 HSPs)
chr6 (20-275)||(29528624-29528879)
chr6 (20-275)||(29526618-29526873)
chr6 (43-256)||(29474974-29475187)
chr6 (20-267)||(28183744-28183991)
chr6 (35-267)||(29612594-29612826)
chr6 (35-256)||(29524816-29525037)
chr6 (139-261)||(29485952-29486074)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 275
Target Start/End: Original strand, 29528624 - 29528879
Alignment:
Q  20 agagaagataaccgtagattatagcaacaaaaatcagcatccagttgatggttaacagttgaactgtaaagcaacctaagaaatatgagaacacaccaat 119  Q
    |||||||| ||| ||||||||| |||||||||||||  ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | ||| ||    
T  29528624 agagaagaaaacagtagattatggcaacaaaaatcaatatccagttgattgttaacagttgaactgtaaagcaacataagaaatatgagaatatacccat 29528723  T
Q  120 ctcagacttaaacttaaacagtttgtgcaagcttaatgacaccaaagcaaacgcagcgtttgaaactacactcagtatgtcaggttttccatccacggca 219  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||  || ||     
T  29528724 ctcagacttcaacttaaacagtttgtgcaagcttaatgacaccaaagcaaacgaagcgtttgaaactacactaagtatgttaggttttccattgacagct 29528823  T
Q  220 ctgtcgtaaaagaatgagtacactgagatgatcatcacaaccgcaaagactgtgca 275  Q
    |||||||| | ||||||||||||| ||||||||| || ||||||||||| ||||||    
T  29528824 ctgtcgtagacgaatgagtacacttagatgatcaccaaaaccgcaaagattgtgca 29528879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 275
Target Start/End: Original strand, 29526618 - 29526873
Alignment:
Q  20 agagaagataaccgtagattatagcaacaaaaatcagcatccagttgatggttaacagttgaactgtaaagcaacctaagaaatatgagaacacaccaat 119  Q
    |||| ||| ||||||||||||| |||||||||||||  |||||||||||||| |||||||||| ||||||||||||||||||||| |||||| |||||||    
T  29526618 agagcagacaaccgtagattatggcaacaaaaatcaatatccagttgatggtcaacagttgaattgtaaagcaacctaagaaataagagaacccaccaat 29526717  T
Q  120 ctcagacttaaacttaaacagtttgtgcaagcttaatgacaccaaagcaaacgcagcgtttgaaactacactcagtatgtcaggttttccatccacggca 219  Q
    |||| ||  ||| |||   ||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||||||| |||||||||| ||  ||     
T  29526718 ctcaaacccaaagttagtgagtttgtgcaagcttaaggacaccatagaaaatgcagcgtttgaaactacactcagtatgtcgggttttccattcaaagct 29526817  T
Q  220 ctgtcgtaaaagaatgagtacactgagatgatcatcacaaccgcaaagactgtgca 275  Q
    |||||||| |||||||| ||||||||||||||||||| ||| ||||||| ||||||    
T  29526818 ctgtcgtagaagaatgaatacactgagatgatcatcaaaactgcaaagagtgtgca 29526873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 43 - 256
Target Start/End: Original strand, 29474974 - 29475187
Alignment:
Q  43 gcaacaaaaatcagcatccagttgatggttaacagttgaactgtaaagcaacctaagaaatatgagaacacaccaatctcagacttaaacttaaacagtt 142  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||  ||| |||| |||||    
T  29474974 gcaacaaaaataaacatccagttgatggttaacagttgaactgtaaagcaacctaagaaataagagaatacaccaatctcaaacccaaagttaatcagtt 29475073  T
Q  143 tgtgcaagcttaatgacaccaaagcaaacgcagcgtttgaaactacactcagtatgtcaggttttccatccacggcactgtcgtaaaagaatgagtacac 242  Q
    |||| || |||||||| ||||||||||| ||||| |||||||||| ||||| ||| ||||||||||||| ||| || | ||| || || |||| ||||||    
T  29475074 tgtgtaaacttaatgaaaccaaagcaaatgcagcatttgaaactatactcaatatttcaggttttccattcacagctcggtcatagaaaaatgcgtacac 29475173  T
Q  243 tgagatgatcatca 256  Q
    ||||||||||||||    
T  29475174 tgagatgatcatca 29475187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 28183991 - 28183744
Alignment:
Q  20 agagaagataaccgtagattatagcaacaaaaatcagcatccagttgatggttaacagttgaactgtaaagcaacctaagaaatatgagaacacaccaat 119  Q
    |||| ||| ||||| ||||||| |||| |||  ||| || ||||||||||||||||||||||| ||||||||||||||  ||||| ||||||||||| ||    
T  28183991 agagcagaaaaccgaagattatggcaaaaaagttcaacacccagttgatggttaacagttgaattgtaaagcaacctacaaaataagagaacacacccat 28183892  T
Q  120 ctcagacttaaacttaaacagtttgtgcaagcttaatgacaccaaagcaaacgcagcgtttgaaactacactcagtatgtcaggttttccatccacggca 219  Q
    ||||  |  |||||||| |||| |||||||||||| ||| || |||||||| ||||| ||||||| |||||||||||||| ||||||||||| ||| ||     
T  28183891 ctcaaccccaaacttaagcagtctgtgcaagcttactgatacaaaagcaaatgcagcatttgaaattacactcagtatgttaggttttccattcacagct 28183792  T
Q  220 ctgtcgtaaaagaatgagtacactgagatgatcatcacaaccgcaaag 267  Q
      ||| || |||||||||||||||||||| ||||||| |||| |||||    
T  28183791 tcgtcatagaagaatgagtacactgagataatcatcaaaaccacaaag 28183744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 35 - 267
Target Start/End: Complemental strand, 29612826 - 29612594
Alignment:
Q  35 agattatagcaacaaaaatcagcatccagttgatggttaacagttgaactgtaaagcaacctaagaaatatgagaacacaccaatctcagacttaaactt 134  Q
    ||||||||||||| |||||||||||||| ||||||||  ||||||||||   || |||||||| |||||| |  || |  || || ||| |   ||||||    
T  29612826 agattatagcaaccaaaatcagcatccaattgatggtccacagttgaaccacaaggcaacctaggaaataagcaaatatgcctatttcaaatccaaactt 29612727  T
Q  135 aaacagtttgtgcaagcttaatgacaccaaagcaaacgcagcgtttgaaactacactcagtatgtcaggttttccatccacggcactgtcgtaaaagaat 234  Q
     | ||||||   ||||||||| |||| ||||||||| ||||| || |||||||  |||| ||| |||||||| || | ||| ||  |||||||| |||||    
T  29612726 gatcagttttgacaagcttaaagacatcaaagcaaatgcagcattcgaaactaggctcaatatttcaggtttaccgttcacagccttgtcgtaatagaat 29612627  T
Q  235 gagtacactgagatgatcatcacaaccgcaaag 267  Q
    |||||||||||||||||||||| ||| ||||||    
T  29612626 gagtacactgagatgatcatcaaaactgcaaag 29612594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 256
Target Start/End: Complemental strand, 29525037 - 29524816
Alignment:
Q  35 agattatagcaacaaaaatcagcatccagttgatggttaacagttgaactgtaaagcaacctaagaaatatgagaacacaccaatctcagacttaaactt 134  Q
    |||||||||||||  ||||||||||||| ||||||||  ||||||||||||  | |||||||| |||||| || || |  || || ||| |   |||| |    
T  29525037 agattatagcaaccgaaatcagcatccaattgatggtccacagttgaactgctaggcaacctaggaaataagaaaatatgcctatttcaaatccaaacct 29524938  T
Q  135 aaacagtttgtgcaagcttaatgacaccaaagcaaacgcagcgtttgaaactacactcagtatgtcaggttttccatccacggcactgtcgtaaaagaat 234  Q
     | |||||||  ||||||||| ||   ||||||||| ||||| || ||||||| ||||| ||| |||||||| || | ||| ||  |||||||| |||||    
T  29524937 gatcagtttggacaagcttaaggatgtcaaagcaaatgcagcattcgaaactatactcaatatttcaggtttcccgttcacagccttgtcgtaatagaat 29524838  T
Q  235 gagtacactgagatgatcatca 256  Q
    ||||||||||||||||||||||    
T  29524837 gagtacactgagatgatcatca 29524816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 261
Target Start/End: Original strand, 29485952 - 29486074
Alignment:
Q  139 agtttgtgcaagcttaatgacaccaaagcaaacgcagcgtttgaaactacactcagtatgtcaggttttccatccacggcactgtcgtaaaagaatgagt 238  Q
    ||||||||||||||||||| || ||||| ||||  ||| ||||||||  |||||||||||| ||||||||||| |||  |  |||| |  ||| ||||||    
T  29485952 agtttgtgcaagcttaatgtcatcaaaggaaacaaagcctttgaaacagcactcagtatgttaggttttccattcacatctttgtcttgtaagtatgagt 29486051  T
Q  239 acactgagatgatcatcacaacc 261  Q
    ||| ||||||| |||||| ||||    
T  29486052 acattgagatgttcatcaaaacc 29486074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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