View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10908_high_1 (Length: 744)
Name: NF10908_high_1
Description: NF10908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10908_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 14 - 415
Target Start/End: Original strand, 3950021 - 3950422
Alignment:
| Q |
14 |
agagtcacaaatacaacataaaactcacacccataactccgaggtcttgggttggaacacaggtaaagaggtccaacctatcaatatcggtattgtcagt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950021 |
agagtcacaaatacaacataaaactcacacccataactccgaggtctcgggttggaacacaggtaaagaggtccaacctatcaatatcggtattgtcagt |
3950120 |
T |
|
| Q |
114 |
taagctaaactttacaagctcgtggtaagaaaataatagtactaattgagttttgtgttaattttgatgaattttttctcttaaatgatttttattgcaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950121 |
taagctaaactttacaagctcgtggtaagaaaataatagtactaattgagttttgtgttaattttgatgaattttttctcttaaatgatttttattgcaa |
3950220 |
T |
|
| Q |
214 |
agttctgtgggaattatccccattcatcgccatatccaaccatgaatttggatcctttcagtgtgtttgtatttttgcagtgacaacaatgattttgaat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3950221 |
agttctgtgggaattatccccattcatcgccatatccaaccatgaatttggatcctttcagtgtgtttgtagttttgcagtgacaacaatgattttgaat |
3950320 |
T |
|
| Q |
314 |
gaatttattctgtaaaattgggtttacttgtaagtgagttgtatgaagtgatttatgtttagtacaaaaatgacgttttgagtcaagttataattaattt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950321 |
gaatttattctgtaaaattgggtttacttgtaagtgagttgtatgaagtgatttatgtttagtacaaaaatgacgttttgagtcaagttataattaattt |
3950420 |
T |
|
| Q |
414 |
ta |
415 |
Q |
| |
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|| |
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|
| T |
3950421 |
ta |
3950422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 409 - 728
Target Start/End: Original strand, 3950624 - 3950943
Alignment:
| Q |
409 |
aattttatcaaaaaacttaaaggaaagtgcatgtcacatgttcatacaaattttgtttttgttgatgatacacgattcatacagatatttccagcatgtg |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950624 |
aattttatcaaaaaacttaaaggaaagtgcatgtcacatgttcatacaaattttgtttttgttgatgatacacgattcatacagatatttccagcatgtg |
3950723 |
T |
|
| Q |
509 |
tactgtttggcaagtcaacttttgcccctgctattttatacctgaataatgatgaaattaatatttgtctaatatacaaatccaatgctttgctggaggg |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950724 |
tactgtttggcaagtcaacttttgcccctgctattttatacctgaataatgatgagattaatatttgtctaatatacaaatccaatgctttgctggaggg |
3950823 |
T |
|
| Q |
609 |
tgaatgtgtatgagttggagagaaaggtcaatgacattgcttcttcaatatgggagaaagttgaatcagatctctagcagccaaagcattgaaggtcaga |
708 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3950824 |
tgaatgtgtatgagttggagagaaaggtcaatgacattgcttcttcaatatgggagaaagttgaatcagatctctagcagccaaaacattgaaggtcaga |
3950923 |
T |
|
| Q |
709 |
aattgctttcttattgctat |
728 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
3950924 |
aattgctttcttattgctat |
3950943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 632 - 728
Target Start/End: Complemental strand, 4216023 - 4215927
Alignment:
| Q |
632 |
aaggtcaatgacattgcttcttcaatatgggagaaagttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctttcttattgctat |
728 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| || | || |||||||||| ||||| |
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| T |
4216023 |
aaggtcaatgacattgcttcttccatatgatagaaagttgaatcagatctctagcggccaaagcattgaagttccgttatagctttcttatggctat |
4215927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 632 - 724
Target Start/End: Complemental strand, 3796899 - 3796807
Alignment:
| Q |
632 |
aaggtcaatgacattgcttcttcaatatgggagaaagttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctttcttattg |
724 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||| || | || |||||||||||| |
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| T |
3796899 |
aaggtcaatgacattgcttcttccatatgatagaaagttgaatcagatcactagcggccaaagcattgaagttccgttatagctttcttattg |
3796807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 632 - 716
Target Start/End: Complemental strand, 4014408 - 4014324
Alignment:
| Q |
632 |
aaggtcaatgacattgcttcttcaatatgggagaaagttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctt |
716 |
Q |
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||||||||||||||| |||||| ||||| |||||| ||||||||||||| ||||||| |||||||||||||| |||||||||| |
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| T |
4014408 |
aaggtcaatgacattacttctttcatatgagagaaacttgaatcagatctatagcagctaaagcattgaaggtttgaaattgctt |
4014324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 664 - 720
Target Start/End: Complemental strand, 4027999 - 4027943
Alignment:
| Q |
664 |
gaaagttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctttctt |
720 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
4027999 |
gaaagtcgaatcagatctctagcagccaaagcattcaaggtcagtaattgctttctt |
4027943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 656 - 716
Target Start/End: Original strand, 3961099 - 3961159
Alignment:
| Q |
656 |
atatgggagaaagttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctt |
716 |
Q |
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||||| |||||||||||| ||||||||||||||||||| |||||||||| || |||||||| |
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| T |
3961099 |
atatgagagaaagttgaaacagatctctagcagccaaatcattgaaggttagtaattgctt |
3961159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 484 - 619
Target Start/End: Complemental strand, 4028182 - 4028044
Alignment:
| Q |
484 |
ttcatacagatatttccagcatgtgtactgtttggcaagtcaacttttgcccctgctattttatacctgaataatgatgaaattaatatttgt---ctaa |
580 |
Q |
| |
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|||||||||||| ||||||||||| | |||| |||| ||||| |||||||||||||||||||| | ||||||| ||| |||||||||| | ||| |
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| T |
4028182 |
ttcatacagataattccagcatgtaaattgttaagcaactcaacgtttgcccctgctattttatatttaaataatggtgacattaatatttttttaataa |
4028083 |
T |
|
| Q |
581 |
tatacaaatccaatgctttgctggagggtgaatgtgtat |
619 |
Q |
| |
|
|||||| ||| |||||| || |||| |||||||||||| |
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|
| T |
4028082 |
tatacagatctaatgctctgtgggagtgtgaatgtgtat |
4028044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 667 - 716
Target Start/End: Complemental strand, 4221287 - 4221238
Alignment:
| Q |
667 |
agttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctt |
716 |
Q |
| |
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||||||||||||||||||||| ||||||||| |||||||| |||||||| |
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| T |
4221287 |
agttgaatcagatctctagcaaacaaagcatttaaggtcagtaattgctt |
4221238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 718
Target Start/End: Complemental strand, 3822754 - 3822703
Alignment:
| Q |
667 |
agttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctttc |
718 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||| |||| ||||| |
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|
| T |
3822754 |
agttgaatcagatctctagcaaacaaagcatttaaggtcagtaatttctttc |
3822703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 624
Target Start/End: Complemental strand, 3796952 - 3796915
Alignment:
| Q |
587 |
aatccaatgctttgctggagggtgaatgtgtatgagtt |
624 |
Q |
| |
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||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
3796952 |
aatccaatgctttgcaggaaggtgaatgtgtatgagtt |
3796915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 44090615 - 44090562
Alignment:
| Q |
78 |
aaagaggtccaacctatcaatatcggtattgtcagttaagctaaactttacaag |
131 |
Q |
| |
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||||| || ||||||| ||||||| |||||||||||| | |||||||||||||| |
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| T |
44090615 |
aaagatgttcaacctaacaatatcagtattgtcagttgatctaaactttacaag |
44090562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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