View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10908_high_13 (Length: 310)
Name: NF10908_high_13
Description: NF10908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10908_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 3547252 - 3547533
Alignment:
| Q |
18 |
aattctagttctataaattgctggtgaaccatctttaagtccagagagtcttctattagcagcattagcacgatccatttcttcaagttgagtcctaata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3547252 |
aattctagttctataaattgctggtgaaccatctttaagtccagagagtcttctattagcagcattagcacgatccatttcttcaagttgagtcctaata |
3547351 |
T |
|
| Q |
118 |
cactttgctttcttcaaaacagtcacaatatcagtattaattctttccctcaatgctttcaaagcttcagttttgtgaagactcttgctctcttcatttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3547352 |
cactttgctttcttcaaaacagtcacaatatcagtattaattctttccctcaatgctttcaaagcttcagttttgtgaagactcttgctctcttcatttg |
3547451 |
T |
|
| Q |
218 |
cttgttcaagctttgtaagtatatcacgaatttcacccatttctgttctcactttctctgcctcttccaagaacaaattcat |
299 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3547452 |
cttgttcaagctttgttagtatatcacgaatttcacccatttctgttctcactttctctgcctcttccaagaacaaattcat |
3547533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University