View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10908_high_18 (Length: 252)
Name: NF10908_high_18
Description: NF10908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10908_high_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 22 - 252
Target Start/End: Complemental strand, 17413043 - 17412817
Alignment:
| Q |
22 |
agccacttacttcaaaaccctctctccccactttctcttgttcattgcttcttgtttccttgttcctttctgcattttctcaacaatggccaacgacgac |
121 |
Q |
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| T |
17413043 |
agccacttacttcaaaaccctct-tccccactttctcttgttcattgcttcttgtttccttgttcctttcttcattttctcaacaatgaccaacgacgac |
17412945 |
T |
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| Q |
122 |
gacaacaatgttttcccaatgggaggtttcaaattttgtaagaatatttctctctatatttccacaatatctctgtctcatgtttttattaannnnnnna |
221 |
Q |
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| T |
17412944 |
---aacaatgttttcccaatgggaggtttcaaattttgtaagaatatttctctctatatttccacaatatctctgtctcatgtttttattaattttttta |
17412848 |
T |
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| Q |
222 |
ttatgcaatgttttcctgactaaatttttgt |
252 |
Q |
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| T |
17412847 |
ttatgcaatgttttccagactaaatttttgt |
17412817 |
T |
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