View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10908_high_4 (Length: 541)
Name: NF10908_high_4
Description: NF10908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10908_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 151 - 506
Target Start/End: Complemental strand, 6415621 - 6415266
Alignment:
| Q |
151 |
tcatggtaactcaaattcgggattctttgtatatcttaatgggttcgtgatttctatccagattataaaaaacattctaatgaacatgtttagatttgtt |
250 |
Q |
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| T |
6415621 |
tcatggaaactcaaattcgcgattctttgtatatctcaatgggttcgtgatttctatccagattataaaaaacattctaatgatcatgtttagatttgtt |
6415522 |
T |
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| Q |
251 |
taagtgatatcccttaggaatatttacgtcctaaaactttagtcgagattgcttgtgttattagaatgtatattacattagattaacctactagaaatag |
350 |
Q |
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| T |
6415521 |
taagtgatatcccttaggaatattgacgtcctaaaactttatttgagattgcttgtgttattagaatgtatattacattggattaacctactagaaatag |
6415422 |
T |
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| Q |
351 |
agtaattggacattttgctagactatttgttgatgttgatttatcaaaaccgattcacgagtatgttcttgtatagagggtgtttgcatttcatgttggg |
450 |
Q |
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| T |
6415421 |
agtaattggacattttgctagactatttgttgatgttgatttatcaaaaccgattcacgagtatgttctcgtatagagggtgtttgcatttcatgttggg |
6415322 |
T |
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| Q |
451 |
ggttgtatatgaaagacttcctaaatttgtaacaattgtcatattgtaggtcatcc |
506 |
Q |
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| T |
6415321 |
ggttgtatatgaaagacttcctaaatttgttaaaattgtcatattgtaggtcatcc |
6415266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 6415818 - 6415688
Alignment:
| Q |
14 |
cacagatcaaatatcgatttaaaagaaatcgaacaatgaaatagagaggaagaagggggcgttcaatcatggggaagagagaatttgatatatccggtct |
113 |
Q |
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| T |
6415818 |
cacagatcaaatattgatttaaaagaaattgaacaatgaaatagagaggaagaagggggtgttcaatcacggggaagagagaatttgatatatccggtct |
6415719 |
T |
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| Q |
114 |
agagtgcactcactcatgcacggtacacaat |
144 |
Q |
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| T |
6415718 |
agagtgcactcactcatgcacgatacacaat |
6415688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 401
Target Start/End: Original strand, 6826688 - 6826806
Alignment:
| Q |
283 |
aaaactttagtcgagattgcttgtgttattagaatgtatattacattagattaacctactagaaatagagtaattggacattttgctagactatttgttg |
382 |
Q |
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| T |
6826688 |
aaaactttaattgaaattgcttgtgatgttggtatgcctattactttagatgaacccactagacatagagtatttggtcactatgctaggctgcttgttg |
6826787 |
T |
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| Q |
383 |
atgttgatttatcaaaacc |
401 |
Q |
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| T |
6826788 |
ttgttgatttatcaaaacc |
6826806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 401
Target Start/End: Complemental strand, 55104727 - 55104654
Alignment:
| Q |
328 |
ttagattaacctactagaaatagagtaattggacattttgctagactatttgttgatgttgatttatcaaaacc |
401 |
Q |
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| T |
55104727 |
ttagatgaacctactagacataaagtatttggtcactatgcaaggctgcttgttgatgttgatttatcaaaacc |
55104654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 401
Target Start/End: Complemental strand, 16574470 - 16574353
Alignment:
| Q |
284 |
aaactttagtcgagattgcttgtgttattagaatgtatattacattagattaacctactagaaatagagtaattggacattttgctagactatttgttga |
383 |
Q |
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| T |
16574470 |
aaactttaattgaaattgcttgtgctattggtatgcctattactttatatgaacctactagaaatagagtgtttggaccttatgcaaggttgcttattga |
16574371 |
T |
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| Q |
384 |
tgttgatttatcaaaacc |
401 |
Q |
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| T |
16574370 |
tattgatttatcaaaacc |
16574353 |
T |
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