View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10908_high_6 (Length: 447)
Name: NF10908_high_6
Description: NF10908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10908_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 430
Target Start/End: Original strand, 56460671 - 56461086
Alignment:
| Q |
15 |
atgaaggagactggacatatacgtggaaattaaaactcccnnnnnnnn-gtgaagttgttgcttttgaggattgcaagaggatgtctttccgttggaatt |
113 |
Q |
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| T |
56460671 |
atgaaggagactggacatatacgtggaaattaaaactcccaaaaaaaaagtgaagttgttgcttttgaggattgcaagaggatgcctttccgttgggatt |
56460770 |
T |
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| Q |
114 |
aataataatatctnnnnnnnngggatagaagacccatttatgtttgtaccnnnnnnnttaaaccatttatgcgtatcaatttagtcatgacaaaaataaa |
213 |
Q |
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| T |
56460771 |
aataataatatctaaaaaaa-gagatagaagacccatttatgtttgtaccaaaaaaataaaaccatttatgcgtatcaatttagtcatgacaaaaataaa |
56460869 |
T |
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| Q |
214 |
attcatagtagtctctaatatttttatgtccagaacaaattgattcaatataacatagggattaatttgttctcaatataaaaatctcaaaggctactat |
313 |
Q |
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| T |
56460870 |
attcatagtagtttctaacatttttatgtcgagaacaaattgattcaatataacatagggattaatttgttctcaatataaaaatctcaaaggctactat |
56460969 |
T |
|
| Q |
314 |
aggttttatttttgttaaagattaaattatcctacacgaaaattgcaaagcattaaattgaatttcactctaaaaaatacattattgttgtcaaagatta |
413 |
Q |
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| T |
56460970 |
aggttttatttttgttaaagattaaattatcctacacgaaaattgcaaaggattaaattgaatttcactctaaaaaatacattattgttgtcaaagatta |
56461069 |
T |
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| Q |
414 |
aattggcatgtctatgt |
430 |
Q |
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| T |
56461070 |
aattggcatgtctatgt |
56461086 |
T |
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