View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10908_high_7 (Length: 408)

Name: NF10908_high_7
Description: NF10908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10908_high_7
NF10908_high_7
[»] chr2 (9 HSPs)
chr2 (15-390)||(17455867-17456242)
chr2 (65-199)||(17805267-17805401)
chr2 (234-292)||(2307359-2307417)
chr2 (289-343)||(2859363-2859417)
chr2 (289-343)||(45690503-45690557)
chr2 (317-346)||(8362402-8362431)
chr2 (234-278)||(7069460-7069504)
chr2 (234-278)||(8504124-8504168)
chr2 (234-278)||(43359369-43359413)
[»] chr1 (11 HSPs)
chr1 (52-174)||(775356-775479)
chr1 (289-343)||(49982460-49982514)
chr1 (234-278)||(49982553-49982597)
chr1 (289-343)||(36735516-36735571)
chr1 (297-343)||(23539946-23539992)
chr1 (297-354)||(40054944-40055001)
chr1 (234-278)||(17203014-17203058)
chr1 (302-346)||(26423842-26423886)
chr1 (234-278)||(34411046-34411090)
chr1 (234-278)||(39084806-39084850)
chr1 (234-278)||(46283039-46283083)
[»] chr4 (11 HSPs)
chr4 (55-199)||(52142584-52142729)
chr4 (302-343)||(4491217-4491258)
chr4 (302-343)||(4695669-4695710)
chr4 (317-346)||(9579665-9579694)
chr4 (317-346)||(9585360-9585389)
chr4 (317-346)||(18051775-18051804)
chr4 (252-293)||(19627871-19627912)
chr4 (234-278)||(17281870-17281914)
chr4 (234-278)||(17370372-17370416)
chr4 (234-278)||(48207344-48207388)
chr4 (234-278)||(54178686-54178730)
[»] scaffold0009 (1 HSPs)
scaffold0009 (297-343)||(214496-214542)
[»] chr8 (6 HSPs)
chr8 (289-342)||(12801454-12801507)
chr8 (289-343)||(30777276-30777330)
chr8 (233-278)||(37218866-37218911)
chr8 (234-278)||(11360265-11360309)
chr8 (234-278)||(36569757-36569801)
chr8 (234-278)||(44637017-44637061)
[»] chr7 (11 HSPs)
chr7 (289-342)||(27800033-27800086)
chr7 (234-278)||(2932672-2932716)
chr7 (289-343)||(2089211-2089265)
chr7 (297-343)||(29688928-29688974)
chr7 (302-346)||(1343382-1343426)
chr7 (303-343)||(8159642-8159682)
chr7 (234-278)||(11640560-11640604)
chr7 (297-353)||(21919682-21919738)
chr7 (234-278)||(22639462-22639506)
chr7 (234-278)||(42584027-42584071)
chr7 (299-343)||(43542138-43542182)
[»] chr3 (6 HSPs)
chr3 (302-346)||(11510718-11510762)
chr3 (317-346)||(4393523-4393552)
chr3 (317-346)||(24105151-24105180)
chr3 (233-278)||(29815393-29815438)
chr3 (302-343)||(52776453-52776494)
chr3 (234-278)||(4521365-4521409)
[»] chr6 (9 HSPs)
chr6 (297-343)||(1705962-1706008)
chr6 (297-343)||(14507977-14508023)
chr6 (297-343)||(19474028-19474074)
chr6 (302-343)||(10887813-10887854)
chr6 (234-278)||(926809-926853)
chr6 (234-278)||(6295645-6295689)
chr6 (234-278)||(6302455-6302499)
chr6 (302-346)||(7344322-7344366)
chr6 (234-278)||(14501291-14501335)
[»] chr5 (3 HSPs)
chr5 (317-346)||(19189484-19189513)
chr5 (234-278)||(2011151-2011195)
chr5 (234-278)||(29665916-29665960)


Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 15 - 390
Target Start/End: Original strand, 17455867 - 17456242
Alignment:
Q  15 atgaactgaaaaagggaatgaagtatgcgcgtggtcattgattacctgtagaagtcatgatttcaggatctcttaaaagccgttgtcggcacaaaacatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17455867 atgaactgaaaaagggaatgaagtatgcgcgtggtcattgattacctgtagaagtcatgatttcaggatctcttaaaagccgttgtcggcacaaaacatt 17455966  T
Q  115 aacaatgaggaggtatagaagctgccacagaatgtaagctgctaagggtaccagaaacatccatgtccaaatataggatttatctgctaagagttgttta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17455967 aacaatgaggaggtatagaagctgccacagaatgtaagctgctaagggtaccagaaacatccatgtccaaatataggatttatctgctaagagttgttta 17456066  T
Q  215 taagggtactcttgcaacgttttttctcgtgcgatggtgttttctaaaatataagtattgacaagcaactaattatttatatagcaagagtaccggtgca 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  17456067 taagggtactcttgcaacgttttttctcgtgcgatggtgttttctaaaatataagtattgacaaacaactaactatttatatagcaagagtaccggtgca 17456166  T
Q  315 gttcaatttatgaggtgtaccgtagaagtcccatatatttttgttatgtgaatgtgcatatattaatggtcgaacc 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17456167 gttcaatttatgaggtgtaccgtagaagtcccatatatttttgttatgtgaatgtgcatatattaatggtcgaacc 17456242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 17805267 - 17805401
Alignment:
Q  65 gaagtcatgatttcaggatctcttaaaagccgttgtcggcacaaaacattaacaatgaggaggtatagaagctgccacagaatgtaagctgctaagggta 164  Q
    |||||||||| ||| ||||||||||||| |||||||||||  || ||||| |||||||||  |||||||| ||||||||   ||||| || ||||||| |    
T  17805267 gaagtcatgacttcgggatctcttaaaaaccgttgtcggcgtaagacattgacaatgaggtagtatagaacctgccacaaggtgtaaactactaagggaa 17805366  T
Q  165 ccagaaacatccatgtccaaatataggatttatct 199  Q
    ||||||||| |||||| || | |||||||||||||    
T  17805367 ccagaaacagccatgtacatagataggatttatct 17805401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 2307417 - 2307359
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaagcaactaattattt 292  Q
    |||||||| |||  ||| ||||||||||||||||| ||||||||| |||||| ||||||    
T  2307417 ttttttcttgtgaaatgatgttttctaaaatataaatattgacaaacaactatttattt 2307359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 2859417 - 2859363
Alignment:
Q  289 atttatatagcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    ||||||| | ||||||||||||| ||  |||||||||||| ||||||||||||||    
T  2859417 atttatagaacaagagtaccggtacacctcaatttatgagatgtaccgtagaagt 2859363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 45690557 - 45690503
Alignment:
Q  289 atttatatagcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    ||||||| ||| ||||||||||| ||  ||||||| |||||||||||||||||||    
T  45690557 atttatagagcgagagtaccggtacacctcaatttgtgaggtgtaccgtagaagt 45690503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 8362431 - 8362402
Alignment:
Q  317 tcaatttatgaggtgtaccgtagaagtccc 346  Q
    ||||||||||||||||||||||||||||||    
T  8362431 tcaatttatgaggtgtaccgtagaagtccc 8362402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 7069460 - 7069504
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  7069460 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 7069504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 8504168 - 8504124
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  8504168 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 8504124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 43359369 - 43359413
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  43359369 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 43359413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 775356 - 775479
Alignment:
Q  52 ttgattacctgtag-aagtcatgatttcaggatctcttaaaagccgttgtcggcacaaaacattaacaatgaggaggtatagaagctgccacagaatgta 150  Q
    |||||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  775356 ttgattacctataggaagtcatgacttcaggatctcttaaaagccgttttcggcacaagacattaacaatgaggaggtatagaagctgccacataatgta 775455  T
Q  151 agctgctaagggtaccagaaacat 174  Q
    ||||||||||||||||||||||||    
T  775456 agctgctaagggtaccagaaacat 775479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 49982514 - 49982460
Alignment:
Q  289 atttatatagcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    |||||||||||| ||||| |||| ||  |||||||||||||||||||||||||||    
T  49982514 atttatatagcaggagtatcggtacacctcaatttatgaggtgtaccgtagaagt 49982460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 49982597 - 49982553
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| |||||||||    
T  49982597 ttttttctcatgagatggtgttttctaaaatataaatattgacaa 49982553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 36735571 - 36735516
Alignment:
Q  289 atttatatagcaag-agtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    ||||||| |||||| ||||||||| || | ||||||||||||||||||||||||||    
T  36735571 atttataaagcaaggagtaccggtacactccaatttatgaggtgtaccgtagaagt 36735516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 343
Target Start/End: Complemental strand, 23539992 - 23539946
Alignment:
Q  297 agcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    ||||||||||||||| ||  ||||||| |||||||||||||||||||    
T  23539992 agcaagagtaccggtacacctcaatttctgaggtgtaccgtagaagt 23539946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 40054944 - 40055001
Alignment:
Q  297 agcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagtcccatatattt 354  Q
    |||| |||||||||| ||  ||||||| ||||||||||||||||||| || |||||||    
T  40054944 agcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccctatattt 40055001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 17203014 - 17203058
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  17203014 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 17203058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 26423886 - 26423842
Alignment:
Q  302 gagtaccggtgcagttcaatttatgaggtgtaccgtagaagtccc 346  Q
    |||||||||| ||  | ||||||||||||||||||||||||||||    
T  26423886 gagtaccggtacaccttaatttatgaggtgtaccgtagaagtccc 26423842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 34411090 - 34411046
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  34411090 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 34411046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 39084850 - 39084806
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  39084850 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 39084806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 46283039 - 46283083
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  46283039 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 46283083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 55 - 199
Target Start/End: Complemental strand, 52142729 - 52142584
Alignment:
Q  55 attacctgtagaa-gtcatgatttcaggatctcttaaaagccgttgtcggcacaaaacattaacaatgaggaggtatagaagctgccacagaatgtaagc 153  Q
    ||||||||||| | ||||||| |||||||||||||||||||| ||||||||  || ||||| |||||||||| |||||||| ||||||||||||||||||    
T  52142729 attacctgtaggatgtcatgacttcaggatctcttaaaagcctttgtcggcgtaagacattgacaatgaggaagtatagaacctgccacagaatgtaagc 52142630  T
Q  154 tgctaagggtaccagaaacatccatgtccaaatataggatttatct 199  Q
    | ||||||| |||||||||| ||||||||||| |||||||||||||    
T  52142629 tactaagggaaccagaaacagccatgtccaaagataggatttatct 52142584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 4491217 - 4491258
Alignment:
Q  302 gagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    |||||||||| ||  |||||||||||||||||||||||||||    
T  4491217 gagtaccggtacacctcaatttatgaggtgtaccgtagaagt 4491258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 4695669 - 4695710
Alignment:
Q  302 gagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    |||||||||||||  ||||||||||||||||||| |||||||    
T  4695669 gagtaccggtgcacctcaatttatgaggtgtaccctagaagt 4695710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 9579694 - 9579665
Alignment:
Q  317 tcaatttatgaggtgtaccgtagaagtccc 346  Q
    ||||||||||||||||||||||||||||||    
T  9579694 tcaatttatgaggtgtaccgtagaagtccc 9579665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 9585389 - 9585360
Alignment:
Q  317 tcaatttatgaggtgtaccgtagaagtccc 346  Q
    ||||||||||||||||||||||||||||||    
T  9585389 tcaatttatgaggtgtaccgtagaagtccc 9585360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 18051804 - 18051775
Alignment:
Q  317 tcaatttatgaggtgtaccgtagaagtccc 346  Q
    ||||||||||||||||||||||||||||||    
T  18051804 tcaatttatgaggtgtaccgtagaagtccc 18051775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 19627871 - 19627912
Alignment:
Q  252 tgttttctaaaatataagtattgacaagcaactaattattta 293  Q
    ||||||||||||||||| |||||||||  |||||||||||||    
T  19627871 tgttttctaaaatataaatattgacaaataactaattattta 19627912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 17281914 - 17281870
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  17281914 ttttttctcctgagatggtgttttctaaaatataaataatgacaa 17281870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 17370416 - 17370372
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  17370416 ttttttctcctgagatggtgttttctaaaatataaataatgacaa 17370372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 48207344 - 48207388
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  48207344 ttttttctcctgagatggtgttttctaaaatataaataatgacaa 48207388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 54178686 - 54178730
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  54178686 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 54178730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 214496 - 214542
Alignment:
Q  297 agcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    |||| |||||||||| || ||||||||||||||||||||||||||||    
T  214496 agcaggagtaccggtacaattcaatttatgaggtgtaccgtagaagt 214542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 12801454 - 12801507
Alignment:
Q  289 atttatatagcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaag 342  Q
    ||||||| ||| ||||||||||| ||  ||||||||||||||||||||||||||    
T  12801454 atttatagagcgagagtaccggtacacctcaatttatgaggtgtaccgtagaag 12801507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 30777330 - 30777276
Alignment:
Q  289 atttatatagcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    ||||||| |||| ||||| |||| ||  |||||||||||||||||||||||||||    
T  30777330 atttataaagcaggagtatcggtacacctcaatttatgaggtgtaccgtagaagt 30777276  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 37218866 - 37218911
Alignment:
Q  233 gttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    |||||||||| || |||| ||||||||||||||||| |||||||||    
T  37218866 gttttttctcatgagatgatgttttctaaaatataaatattgacaa 37218911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 11360309 - 11360265
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  11360309 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 11360265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 36569801 - 36569757
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  36569801 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 36569757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 44637061 - 44637017
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  44637061 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 44637017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 27800086 - 27800033
Alignment:
Q  289 atttatatagcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaag 342  Q
    ||||||| ||| ||||||||||| ||  ||||||||||||||||||||||||||    
T  27800086 atttatagagcgagagtaccggtacacctcaatttatgaggtgtaccgtagaag 27800033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 2932716 - 2932672
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    |||||||||||| |||||||||||||||||||||| || ||||||    
T  2932716 ttttttctcgtgagatggtgttttctaaaatataaataatgacaa 2932672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 2089211 - 2089265
Alignment:
Q  289 atttatatagcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    ||||||| ||||||||||||||| ||  ||| ||||| |||||||||||||||||    
T  2089211 atttataaagcaagagtaccggtacacctcattttattaggtgtaccgtagaagt 2089265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 343
Target Start/End: Complemental strand, 29688974 - 29688928
Alignment:
Q  297 agcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    |||| |||||||||| ||  |||||||||||||||||||||||||||    
T  29688974 agcaggagtaccggtacacctcaatttatgaggtgtaccgtagaagt 29688928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 1343382 - 1343426
Alignment:
Q  302 gagtaccggtgcagttcaatttatgaggtgtaccgtagaagtccc 346  Q
    |||||||||| ||  |||||||||| |||||||||||||||||||    
T  1343382 gagtaccggtacatctcaatttatgtggtgtaccgtagaagtccc 1343426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 8159682 - 8159642
Alignment:
Q  303 agtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    ||||||||  || ||||||||||||||||||||||||||||    
T  8159682 agtaccggcacacttcaatttatgaggtgtaccgtagaagt 8159642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 11640560 - 11640604
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  11640560 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 11640604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 21919738 - 21919682
Alignment:
Q  297 agcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagtcccatatatt 353  Q
    |||| |||||||||| ||  ||||||| ||||||||||||||||||| || ||||||    
T  21919738 agcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccctatatt 21919682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 22639506 - 22639462
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  22639506 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 22639462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 42584027 - 42584071
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||| ||||||||||||||||| |||||||||    
T  42584027 ttttttctcatgagatgatgttttctaaaatataaatattgacaa 42584071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 43542138 - 43542182
Alignment:
Q  299 caagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    |||||||| || ||||  |||||||||||||||||||||||||||    
T  43542138 caagagtatcgatgcacctcaatttatgaggtgtaccgtagaagt 43542182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 11510762 - 11510718
Alignment:
Q  302 gagtaccggtgcagttcaatttatgaggtgtaccgtagaagtccc 346  Q
    |||||||||||||  ||||||||||||||||| ||||||||||||    
T  11510762 gagtaccggtgcacctcaatttatgaggtgtatcgtagaagtccc 11510718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 4393523 - 4393552
Alignment:
Q  317 tcaatttatgaggtgtaccgtagaagtccc 346  Q
    ||||||||||||||||||||||||||||||    
T  4393523 tcaatttatgaggtgtaccgtagaagtccc 4393552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 24105180 - 24105151
Alignment:
Q  317 tcaatttatgaggtgtaccgtagaagtccc 346  Q
    ||||||||||||||||||||||||||||||    
T  24105180 tcaatttatgaggtgtaccgtagaagtccc 24105151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 29815393 - 29815438
Alignment:
Q  233 gttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    |||||||||| || |||| ||||||||||||||||| |||||||||    
T  29815393 gttttttctcatgagatgatgttttctaaaatataaatattgacaa 29815438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 52776494 - 52776453
Alignment:
Q  302 gagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    |||||||||| ||  |||||||||||||||||||||||||||    
T  52776494 gagtaccggtacacctcaatttatgaggtgtaccgtagaagt 52776453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 4521409 - 4521365
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  4521409 ttttttctcctgagatggtgttttctaaaatataaataatgacaa 4521365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 1705962 - 1706008
Alignment:
Q  297 agcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    |||| |||||||||| ||  |||||||||||||||||||||||||||    
T  1705962 agcaggagtaccggtacacctcaatttatgaggtgtaccgtagaagt 1706008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 14507977 - 14508023
Alignment:
Q  297 agcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    |||| |||||||||| ||  |||||||||||||||||||||||||||    
T  14507977 agcaggagtaccggtacacctcaatttatgaggtgtaccgtagaagt 14508023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 19474028 - 19474074
Alignment:
Q  297 agcaagagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    ||||||||||||||| ||  ||||||| |||||||||||||||||||    
T  19474028 agcaagagtaccggtacacctcaatttgtgaggtgtaccgtagaagt 19474074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 10887854 - 10887813
Alignment:
Q  302 gagtaccggtgcagttcaatttatgaggtgtaccgtagaagt 343  Q
    |||||||||| ||  |||||||||||||||||||||||||||    
T  10887854 gagtaccggtacacctcaatttatgaggtgtaccgtagaagt 10887813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 926809 - 926853
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  926809 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 926853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 6295645 - 6295689
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  6295645 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 6295689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 6302455 - 6302499
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  6302455 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 6302499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 7344366 - 7344322
Alignment:
Q  302 gagtaccggtgcagttcaatttatgaggtgtaccgtagaagtccc 346  Q
    |||||||||| ||  |||||||||| |||||||||||||||||||    
T  7344366 gagtaccggtacacctcaatttatgtggtgtaccgtagaagtccc 7344322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 14501291 - 14501335
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  14501291 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 14501335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 19189484 - 19189513
Alignment:
Q  317 tcaatttatgaggtgtaccgtagaagtccc 346  Q
    ||||||||||||||||||||||||||||||    
T  19189484 tcaatttatgaggtgtaccgtagaagtccc 19189513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 2011195 - 2011151
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  2011195 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 2011151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 29665960 - 29665916
Alignment:
Q  234 ttttttctcgtgcgatggtgttttctaaaatataagtattgacaa 278  Q
    ||||||||| || |||||||||||||||||||||| || ||||||    
T  29665960 ttttttctcatgagatggtgttttctaaaatataaataatgacaa 29665916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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