View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10908_low_10 (Length: 350)
Name: NF10908_low_10
Description: NF10908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10908_low_10 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 29 - 325
Target Start/End: Complemental strand, 28670134 - 28669842
Alignment:
| Q |
29 |
agtaacatgaaccttttgaaaataacatatatgtgtgctgtattaggtgagcaacattcctttgcgcctaatccacgttccttccttcctaatcctacta |
128 |
Q |
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| T |
28670134 |
agtaacatgaaccttttgaaaataacatatatgtgtgctgtattaggtgagcaacattcctttgcgcctaatccacgttccttccttcctaatcctacta |
28670035 |
T |
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| Q |
129 |
atgctctgtttgataataacaataat-aatttatttggtaataactaacannnnnnnnnnnnaacttatagcgttttagtaataaactacgttaagtaga |
227 |
Q |
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| T |
28670034 |
atgctctgtttgataataacaataataaatctatttggtaataactaa----ttttttttttaacttatagcgtttta-taataaactacgttaagtaaa |
28669940 |
T |
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| Q |
228 |
ctatagtttttcacttttcctaaacatctttgaatgtcatttaagttaattgaatcgttaattttattaaacactattaattcaatcaattaacttat |
325 |
Q |
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| T |
28669939 |
ctatagtttttcacttttcctaaacatctttgaatgttatttaagttaatttaatcgttaatttgattaaacactattaattcaatcaattaacttat |
28669842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 22347330 - 22347286
Alignment:
| Q |
284 |
gttaattttattaaacactattaattcaatcaattaacttatcta |
328 |
Q |
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| T |
22347330 |
gttaattttattaaatactacaaattcaatcagttaacttatcta |
22347286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 325
Target Start/End: Complemental strand, 42603876 - 42603837
Alignment:
| Q |
286 |
taattttattaaacactattaattcaatcaattaacttat |
325 |
Q |
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| T |
42603876 |
taattttattaaacactacaaattcaatcaattaacttat |
42603837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 7515237 - 7515201
Alignment:
| Q |
283 |
cgttaattttattaaacactattaattcaatcaatta |
319 |
Q |
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| T |
7515237 |
cgttaattttattaaacactataaatttaatcaatta |
7515201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 19087423 - 19087481
Alignment:
| Q |
267 |
tttaagttaattgaatcgttaattttattaaacactattaattcaatcaattaacttat |
325 |
Q |
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||||| |||||| || |||||||||||| ||| ||||| |||||||||| ||||||||| |
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| T |
19087423 |
tttaaattaattcaaccgttaattttatcaaatactataaattcaatcatttaacttat |
19087481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 326
Target Start/End: Original strand, 8112 - 8152
Alignment:
| Q |
286 |
taattttattaaacactattaattcaatcaattaacttatc |
326 |
Q |
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| T |
8112 |
taattttatcaaacactacaaattcaatcaattaacttatc |
8152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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