View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10908_low_11 (Length: 336)
Name: NF10908_low_11
Description: NF10908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10908_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 47158987 - 47158663
Alignment:
| Q |
1 |
cgacactcctcaacactagtactagtattttcctctagtaaaaagcctccttagaattgcaaaatatattccaaccgactcaaatcaataaatcaaaagc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47158987 |
cgacactcctcaacaccagtactagtattttgctctagtaaaaagcctccttagaattgcaaaatatattccaaccgactcaaatcaataaatcaaaagc |
47158888 |
T |
|
| Q |
101 |
aaaattggtggtgccacgtgtatttttaagtaacagggagtagttgtgatttaattaatggaaagcgttaagtttgttgctttaataattggacatcgtc |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47158887 |
aaaattggtggtgccatgtgtatttttaagtaacagggggtagttgtgatttaattaatggaaagcgttaagtttgttgctttaataattggacatcgtc |
47158788 |
T |
|
| Q |
201 |
ccaattgaaaacgaacacagtcatgaagaagtacgtgatgtttcaaaatctttcaactgactcacgataatatttttattttgcctctaaaagaagctag |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47158787 |
ccaattgaacacgaacacagtcatgaagaagtacgtgatgtttcaaaatctttcaactgactcaagataatatttttattttgcctctaaaagaagctag |
47158688 |
T |
|
| Q |
301 |
tagtataatatttttccgggttctt |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
47158687 |
tagtataatatttttccgggttctt |
47158663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University