View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10908_low_12 (Length: 336)

Name: NF10908_low_12
Description: NF10908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10908_low_12
NF10908_low_12
[»] chr3 (11 HSPs)
chr3 (17-336)||(2855404-2855723)
chr3 (17-336)||(2838194-2838513)
chr3 (32-336)||(5413111-5413415)
chr3 (21-336)||(2749220-2749535)
chr3 (17-336)||(2807492-2807811)
chr3 (17-336)||(2759439-2759758)
chr3 (18-336)||(2769294-2769612)
chr3 (17-336)||(2818782-2819101)
chr3 (18-336)||(2790545-2790863)
chr3 (18-336)||(2797586-2797904)
chr3 (32-124)||(3201381-3201473)
[»] scaffold0691 (1 HSPs)
scaffold0691 (17-336)||(5746-6065)


Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 2855404 - 2855723
Alignment:
17 actttcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaatatgagttagaaaggatttcttgaaaaattctgcaacatgca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
2855404 actttcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttatgaatatgagttagaaaggatttcttgaaaaattctgcaacatgca 2855503  T
117 tcattctagtagtgattatgatcctactacctttattgctattaggcatggcaaattcaacctggtcggaaaaatcttcttgccaaacatcatcaaagaa 216  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2855504 tcattctagtagtgattatgatcctactacctttattgttattaggcatggcaaattcaacctggtcggaaaaatcttcttgccaaacatcatcaaagaa 2855603  T
217 taccaaatacctcttatgttgcaggtattgccttacttctataatcagtgactggtcatccattttgtgcaacatctgtggaagagggtcttcagttccc 316  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
2855604 taccaaatacctcttatgttgcaggtattgccttacttgtataatcagtgactggtcatccattttgtgcaacatcagtggaagagggtcttcagttccc 2855703  T
317 cgacaaaattgctccatcat 336  Q
    ||||||||||||||||||||    
2855704 cgacaaaattgctccatcat 2855723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 2838194 - 2838513
Alignment:
17 actttcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaatatgagttagaaaggatttcttgaaaaattctgcaacatgca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
2838194 actttcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttatgaatatgagttagaaaggatttcttgaaaaattctgcaacatgca 2838293  T
117 tcattctagtagtgattatgatcctactacctttattgctattaggcatggcaaattcaacctggtcggaaaaatcttcttgccaaacatcatcaaagaa 216  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
2838294 tcattctagtagtgattatgatcctactacctttattgttattaggcatggcaaattcaatctggtcggaaaaatcttcttgccaaacatcatcaaagaa 2838393  T
217 taccaaatacctcttatgttgcaggtattgccttacttctataatcagtgactggtcatccattttgtgcaacatctgtggaagagggtcttcagttccc 316  Q
    || ||| |||||||||||||| ||||||||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
2838394 tatcaagtacctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccc 2838493  T
317 cgacaaaattgctccatcat 336  Q
    ||||||||||||||||||||    
2838494 cgacaaaattgctccatcat 2838513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 32 - 336
Target Start/End: Complemental strand, 5413415 - 5413111
Alignment:
32 agttcccatgctttgtttggaggcaaaagttgcaggttgtgaatatgagttagaaaggatttcttgaaaaattctgcaacatgcatcattctagtagtga 131  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||    |||||||||||| |||||||| || ||||| |||||||||||||| ||||    
5413415 agttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatatactagaaaggattttttgaaaaaatccgcaacttgcatcattctagtggtga 5413316  T
132 ttatgatcctactacctttattgctattaggcatggcaaattcaacctggtcggaaaaatcttcttgccaaacatcatcaaagaataccaaatacctctt 231  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||||||||| || ||||||| |||||| |||||||||||||||| ||||||||||||    
5413315 ttatgatcctactacctttattgtttttaggcatcgcaaattcaacctggtcagagaaatcttgttgccatacatcatcaaagaatatcaaatacctctt 5413216  T
232 atgttgcaggtattgccttacttctataatcagtgactggtcatccattttgtgcaacatctgtggaagagggtcttcagttccccgacaaaattgctcc 331  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||    
5413215 atgttgcaggtattgcctcacttctataatcagtgaccggtcatccattttgtgtaacatctgcggaagagagtcttcagttccccgacaaaattgctcc 5413116  T
332 atcat 336  Q
    |||||    
5413115 atcat 5413111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 336
Target Start/End: Complemental strand, 2749535 - 2749220
Alignment:
21 tcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaatatgagttagaaaggatttcttgaaaaattctgcaacatgcatcat 120  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||    
2749535 tcttgcagaaaagttcccatgctttgtttggaggcaaaagttgcaggttgtgaatatgagttagaaaggattttttgaaaaaatctgcaacatacatcat 2749436  T
121 tctagtagtgattatgatcctactacctttattgctattaggcatggcaaattcaacctggtcggaaaaatcttcttgccaaacatcatcaaagaatacc 220  Q
    |||||| ||||| || |||||||||||||||||| |||| ||||||||||||| ||||||||| | ||||||||||||||| || ||||||||||||| |    
2749435 tctagtggtgatgataatcctactacctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttcttgccatacgtcatcaaagaatatc 2749336  T
221 aaatacctcttatgttgcaggtattgccttacttctataatcagtgactggtcatccattttgtgcaacatctgtggaagagggtcttcagttccccgac 320  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||  |||||| ||||| ||| | |||||    
2749335 aaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgac 2749236  T
321 aaaattgctccatcat 336  Q
    | ||||||||||||||    
2749235 agaattgctccatcat 2749220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 2807811 - 2807492
Alignment:
17 actttcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaatatgagttagaaaggatttcttgaaaaattctgcaacatgca 116  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| ||||  ||||||||||||||||||||| |||||||| ||||    
2807811 actttcttgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacatgaactagaaaggatttcttgaaaaaatctgcaacttgca 2807712  T
117 tcattctagtagtgattatgatcctactacctttattgctattaggcatggcaaattcaacctggtcggaaaaatcttcttgccaaacatcatcaaagaa 216  Q
    |||||||||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
2807711 tcattctagttgtgattatgatcctactacctttattgttgttaggcatagcaaattcaacctggtcagaaaaatcttcttgccatacatcatcaaagaa 2807612  T
217 taccaaatacctcttatgttgcaggtattgccttacttctataatcagtgactggtcatccattttgtgcaacatctgtggaagagggtcttcagttccc 316  Q
    || |||||||||||||||||||||||||||||| ||||||| ||||||||| | |||||||| |||| | ||| | | ||||||||||||||||||| ||    
2807611 tatcaaatacctcttatgttgcaggtattgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcc 2807512  T
317 cgacaaaattgctccatcat 336  Q
     |||||||||||||||||||    
2807511 tgacaaaattgctccatcat 2807492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 2759758 - 2759439
Alignment:
17 actttcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaatatgagttagaaaggatttcttgaaaaattctgcaacatgca 116  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| ||||  |||||| |||||||||||||| |||||||| ||||    
2759758 actttcttgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacatgaactagaaatgatttcttgaaaaaatctgcaacttgca 2759659  T
117 tcattctagtagtgattatgatcctactacctttattgctattaggcatggcaaattcaacctggtcggaaaaatcttcttgccaaacatcatcaaagaa 216  Q
    | |||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
2759658 taattctagtggtgattatgatcctactacctttgttgttattaggcatggcaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaa 2759559  T
217 taccaaatacctcttatgttgcaggtattgccttacttctataatcagtgactggtcatccattttgtgcaacatctgtggaagagggtcttcagttccc 316  Q
    || |||||||||||||||||  ||||||| |||||| ||| |||||||||||  ||||||||||||||| ||| ||| ||||||||||||||||||| ||    
2759558 tatcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcagtttcc 2759459  T
317 cgacaaaattgctccatcat 336  Q
     ||||||||||| |||||||    
2759458 tgacaaaattgcgccatcat 2759439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 2769612 - 2769294
Alignment:
18 ctttcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaatatgagttagaaaggatttcttgaaaaattctgcaacatgcat 117  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||| |||  ||| ||||  ||||||||||||||||||||| ||||||||||||||    
2769612 ctttcttgcagaagagttcccatgctttgttaggaggcaaaagttgcatgttaagaacatgaactagaaaggatttcttgaaaaaatctgcaacatgcat 2769513  T
118 cattctagtagtgattatgatcctactacctttattgctattaggcatggcaaattcaacctggtcggaaaaatcttcttgccaaacatcatcaaagaat 217  Q
    |||||| || || |||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
2769512 cattcttgtggttattatgatcctactacgtttattgttatttggcatggaaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaat 2769413  T
218 accaaatacctcttatgttgcaggtattgccttacttctataatcagtgactggtcatccattttgtgcaacatctgtggaagagggtcttcagttcccc 317  Q
    | |||||||||||||||||| ||||||| |||||| ||||| | |||||||  ||||||||||||||| ||||||| | | ||||| ||||||||| ||     
2769412 atcaaatacctcttatgttgtaggtatttccttacctctattaccagtgacatgtcatccattttgtgtaacatctttagcagaggttcttcagtttcct 2769313  T
318 gacaaaattgctccatcat 336  Q
    |||||||||||||||||||    
2769312 gacaaaattgctccatcat 2769294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 2819101 - 2818782
Alignment:
17 actttcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaatatgagttagaaaggatttcttgaaaaattctgcaacatgca 116  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| ||||  |||||| |||||||||||||| |||||||| ||||    
2819101 actttcttgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacatgaactagaaatgatttcttgaaaaaatctgcaacttgca 2819002  T
117 tcattctagtagtgattatgatcctactacctttattgctattaggcatggcaaattcaacctggtcggaaaaatcttcttgccaaacatcatcaaagaa 216  Q
    ||||||| || ||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
2819001 tcattcttgtggtgattatgatcctactacctttgttgttattgggcatggcaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaa 2818902  T
217 taccaaatacctcttatgttgcaggtattgccttacttctataatcagtgactggtcatccattttgtgcaacatctgtggaagagggtcttcagttccc 316  Q
    ||  ||||||||||||||||  ||||||| |||||| |||||||||||| ||  ||||||||||||| | || |||| | ||  ||||||||||| | ||    
2818901 tattaaatacctcttatgttctaggtatttccttacctctataatcagtaacctgtcatccattttgcgtaaaatctctagatcagggtcttcagcttcc 2818802  T
317 cgacaaaattgctccatcat 336  Q
     || ||||||||||||||||    
2818801 tgataaaattgctccatcat 2818782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 2790863 - 2790545
Alignment:
18 ctttcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaatatgagttagaaaggatttcttgaaaaattctgcaacatgcat 117  Q
    ||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||| ||||  |||||| |||||||||||||| |||||||| |||||    
2790863 ctttcttgcagaagagttcccatgctttgtttggtgtcaaaagttgcaagttgtgaacatgaactagaaaagatttcttgaaaaaatctgcaacttgcat 2790764  T
118 cattctagtagtgattatgatcctactacctttattgctattaggcatggcaaattcaacctggtcggaaaaatcttcttgccaaacatcatcaaagaat 217  Q
    ||||||||| |||||||||||||||| |||||||||| |||| || ||||||||||||| |||||||||||||||||||||||| |||||||| ||||||    
2790763 cattctagtggtgattatgatcctacaacctttattgttatttggaatggcaaattcaatctggtcggaaaaatcttcttgccatacatcatcgaagaat 2790664  T
218 accaaatacctcttatgttgcaggtattgccttacttctataatcagtgactggtcatccattttgtgcaacatctgtggaagagggtcttcagttcccc 317  Q
    | ||||||| | ||||||| |||||||||||| |||| || ||| ||||||| ||||||||||||||| ||||||||   ||||||| |||||||| | |    
2790663 atcaaatactttttatgtttcaggtattgcctcacttgtagaatgagtgacttgtcatccattttgtgtaacatctgcaaaagagggccttcagtttcgc 2790564  T
318 gacaaaattgctccatcat 336  Q
     |||||||| |||||||||    
2790563 tacaaaattcctccatcat 2790545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 2797904 - 2797586
Alignment:
18 ctttcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaatatgagttagaaaggatttcttgaaaaattctgcaacatgcat 117  Q
    ||||||| |||||||||||||||| ||||||||| | ||||||||||| |||||||| ||||  | ||||||||||||||||||| |||||||| |||||    
2797904 ctttcttgcagaagagttcccatgatttgtttggtgtcaaaagttgcaagttgtgaacatgaacttgaaaggatttcttgaaaaaatctgcaacttgcat 2797805  T
118 cattctagtagtgattatgatcctactacctttattgctattaggcatggcaaattcaacctggtcggaaaaatcttcttgccaaacatcatcaaagaat 217  Q
    |||||| || ||||| ||||||||| |  |||| ||| |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||    
2797804 cattctcgtggtgatgatgatcctatttgctttgttgttattaggcatggcaaattcaacctggtcagaaaagtcttcttgccatacatcatcaaagaat 2797705  T
218 accaaatacctcttatgttgcaggtattgccttacttctataatcagtgactggtcatccattttgtgcaacatctgtggaagagggtcttcagttcccc 317  Q
    | ||||||| | |||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||| ||||||||   |||||||  ||||||| | |    
2797704 atcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgacttgtcatccattttgtgtaacatctgcaaaagagggctttcagtttcgc 2797605  T
318 gacaaaattgctccatcat 336  Q
     |||||||| |||||||||    
2797604 tacaaaattcctccatcat 2797586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 3201473 - 3201381
Alignment:
32 agttcccatgctttgtttggaggcaaaagttgcaggttgtgaatatgagttagaaaggatttcttgaaaaattctgcaacatgcatcattcta 124  Q
    |||||||| |||||||||||||||||| |||| |||| ||||||||||   ||||| |||||||| ||| |||| || |||||||||||||||    
3201473 agttcccacgctttgtttggaggcaaaggttgtaggtggtgaatatgaacaagaaaagatttcttaaaatattcagctacatgcatcattcta 3201381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 5746 - 6065
Alignment:
17 actttcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaatatgagttagaaaggatttcttgaaaaattctgcaacatgca 116  Q
    ||||| || ||||||||||||||| |||||||||||||||| |||||||| ||||||| ||||  || ||||||||||||||||||||| |||||| |||    
5746 acttttttgcagaagagttcccatactttgtttggaggcaagagttgcagtttgtgaacatgaactataaaggatttcttgaaaaattcggcaacaagca 5845  T
117 tcattctagtagtgattatgatcctactacctttattgctattaggcatggcaaattcaacctggtcggaaaaatcttcttgccaaacatcatcaaagaa 216  Q
    ||||||| || |||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
5846 tcattcttgtggtgattataatcctactacctttattgttattaggcatggcaaattcaacctggtcagaaaaatcttcttgccatacatcatcaaagaa 5945  T
217 taccaaatacctcttatgttgcaggtattgccttacttctataatcagtgactggtcatccattttgtgcaacatctgtggaagagggtcttcagttccc 316  Q
    || |||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||| ||||| || |||||||||||||||||| ||    
5946 tatcaaatacctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcc 6045  T
317 cgacaaaattgctccatcat 336  Q
    ||||||||||||||||||||    
6046 cgacaaaattgctccatcat 6065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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