View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10908_low_15 (Length: 304)
Name: NF10908_low_15
Description: NF10908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10908_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 28078761 - 28078487
Alignment:
| Q |
17 |
aaagattgtctccggtggagtctctcgagttttgtctgcagatgtaatcccaatctttaatagtcatctttctcttcattttaaactttaaatactttca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28078761 |
aaagattgtctccggtggagtctctcgagttttgtctgcagatgtaatcccagcctttaatagtcatctctctcttcattttaaactttaaatactttca |
28078662 |
T |
|
| Q |
117 |
ttttattaatttttaatggtcaagattccacaacatggtgcagtcactcgaggggatccaaacccattacttagaggggatacttgtggcttcttaagaa |
216 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28078661 |
ctttattaatttttaatggccaagattccacagcatggtgcagtcactcgaggggatccaaacccattacttagaggggatacttatggcttcttaagaa |
28078562 |
T |
|
| Q |
217 |
aaagaagactgtcatagctaattatcatgtcaatgttcaatcttggtcttggtaaagaaatcatgcccatttttcatctca |
297 |
Q |
| |
|
|||||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28078561 |
aaagaagagtgtc------gatcatcatgtcaatattcaatcttggtcttggtaaagaaatcatgcccatttttcatctca |
28078487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 59 - 281
Target Start/End: Complemental strand, 28079055 - 28078833
Alignment:
| Q |
59 |
tgtaatcccaatctttaatagtcatctttctcttcattttaaactttaaatactttcattttattaatttttaatggtcaagattccacaacatggtgca |
158 |
Q |
| |
|
|||||||||| |||||||||| ||| | ||||||||||||| |||||||||||||| ||| ||||||||||||| |||||||||||| ||| ||||| |
|
|
| T |
28079055 |
tgtaatcccagcttttaatagtcgtctctttcttcattttaaaatttaaatactttcactttgttaatttttaatgaccaagattccacatcatagtgca |
28078956 |
T |
|
| Q |
159 |
gtcactcgaggggatccaaacccattacttagaggggatacttgtggcttcttaagaaaaagaagactgtcatagctaattatcatgtcaatgttcaatc |
258 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | || ||||||||||| ||| ||| |
|
|
| T |
28078955 |
gtcactcaaggggatccaaacccattacttagatgggatacttgtggcttcttaagaaaaagaagagtgtcatagttgatcatcatgtcaatattccatc |
28078856 |
T |
|
| Q |
259 |
ttggtcttggtaaagaaatcatg |
281 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28078855 |
ttggtcttggtaaagaaatcatg |
28078833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 156
Target Start/End: Original strand, 33895773 - 33895883
Alignment:
| Q |
46 |
ttttgtctgcagatgtaatcccaatctttaatagtcatctttctcttcattttaaactttaaatactttcattttattaatttttaatggtcaagattcc |
145 |
Q |
| |
|
|||| ||||||| | |||||| ||| |||||||| ||||| ||||||| |||||| ||||||||||| ||| ||||||||| |||||| || |||||||| |
|
|
| T |
33895773 |
ttttatctgcagttttaatcctaatatttaatagccatctctctcttctttttaatctttaaatactctcactttattaatgtttaatagttaagattcc |
33895872 |
T |
|
| Q |
146 |
acaacatggtg |
156 |
Q |
| |
|
|| |||||||| |
|
|
| T |
33895873 |
actacatggtg |
33895883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 180
Target Start/End: Complemental strand, 38176358 - 38176209
Alignment:
| Q |
31 |
gtggagtctctcgagttttgtctgcagatgtaatcccaatctttaatagtcatctttctcttcattttaaactttaaatactttcattttattaattttt |
130 |
Q |
| |
|
|||||||||||| |||||| || | || | |||| ||| | ||||||| |||| ||||||| |||||||| |||||| || ||| || |||||||||| |
|
|
| T |
38176358 |
gtggagtctctctagttttttcagtagttttaatgacaaccattaatagctatctctctcttctttttaaacattaaatgctctcacttaattaattttt |
38176259 |
T |
|
| Q |
131 |
aatggtcaagattccacaacatggtgcagtcactcgaggggatccaaacc |
180 |
Q |
| |
|
||||| ||||||| ||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
38176258 |
aatggacaagatttcactgcatggtgcagtcactggaggggatccaaacc |
38176209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 21353962 - 21354021
Alignment:
| Q |
121 |
attaatttttaatggtcaagattccacaacatggtgcagtcactcgaggggatccaaacc |
180 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||||||||||| ||||||||||||||| |
|
|
| T |
21353962 |
attaatttttaatggacaagattttactgcatggtgcagtcactggaggggatccaaacc |
21354021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 1171703 - 1171654
Alignment:
| Q |
99 |
aaactttaaatactttcattttattaatttttaatggtcaagattccaca |
148 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
1171703 |
aaactttaaatattttcactttattaatttttaatgatcaagatttcaca |
1171654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University