View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10908_low_2 (Length: 590)
Name: NF10908_low_2
Description: NF10908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10908_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 16 - 573
Target Start/End: Complemental strand, 42394204 - 42393647
Alignment:
| Q |
16 |
gagagggagagcttaggagcggagtttaggaagacagcagcggagatggtgcagctcatagggaagccgaacttgtcggannnnnnncctgcgttggctc |
115 |
Q |
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| T |
42394204 |
gagagggagagcttaggagcggaatttaggaagacagcagcagagatggtgcagctcatagggaagccgaacttgtcagatttttttcctgcgctggctc |
42394105 |
T |
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| Q |
116 |
ggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaatatttgaaaagatgattggtgaacgaatggtgaaggatgt |
215 |
Q |
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| T |
42394104 |
ggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaatatttgaaaagatgattggtgaacgaatggtgaaggatgt |
42394005 |
T |
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| Q |
216 |
agaaggaaaggagagtgaaagtaaggattttttgcagtttttgttgaatttgaaggaggaaggtgattccaagacaccattcacaagcacccacgtgaag |
315 |
Q |
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| T |
42394004 |
agaaggaaaggagagtgaaagtaaggattttttgcagtttttgttgaatttgaaggaggaaggtgattccaagacaccattcacaagcacccacgtgaag |
42393905 |
T |
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| Q |
316 |
gctcttctcctggtatgctacctttgttacacatttatgtttagcgtcttctcacnnnnnnnngcggcatatggtttatttaactctgattcaaattaaa |
415 |
Q |
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| T |
42393904 |
gctcttctcctggtatgctacctttgttacacatttatgtttagcgtcttctcacttttttttgcggtatatggtttgtttaactctgattcaaattaaa |
42393805 |
T |
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| Q |
416 |
atttatttgagaatgctaacatgtgccctaaggcacgtgttgaagaacttaataccattgagtttgtatgaacaggacatggtacttggtggatcagaca |
515 |
Q |
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| T |
42393804 |
atttatttgagaatgctaacatgtgccctaaggcgtgcgttgaagaacttaataccattgagtttgtatgaacaggacatggtacttggtggatcagaca |
42393705 |
T |
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| Q |
516 |
catcctccaataccgttgagtttgcaatggcagaaatgatgaacaaaccaggagtaat |
573 |
Q |
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| T |
42393704 |
catcctccaataccgttgaatttgcaatggcagaaatgatgaacaaaccaggagtaat |
42393647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 42378296 - 42377959
Alignment:
| Q |
9 |
aggagcagagagggagagcttaggagcggagtttaggaagacagcagcggagatggtgcagctcatagggaagccgaacttgtcggannnnnnncctgcg |
108 |
Q |
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| T |
42378296 |
aggagaagagagggagagtttaggggcggagtttagggaggcggtggcggagatggtgcagctattggggaagccgaatttgtcggatttttttcctggg |
42378197 |
T |
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| Q |
109 |
ttggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaatatttgaaaagatgattggtgaacgaatggtga |
208 |
Q |
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| T |
42378196 |
ttggcccggtttgatttgcagggtgttgtgaaagatatgaatgctttggtgcctcgctttgatgggatatttgagaagatgattggtgaacgattgaaga |
42378097 |
T |
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| Q |
209 |
aggatgtagaaggaaaggag---agtgaaagtaaggattttttgcagtttttgttgaatttgaaggaggaaggtgattccaagacaccattcacaagcac |
305 |
Q |
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| T |
42378096 |
aggaagaggatgggaaggagaataatgggagtagggactttctgcagtttttgttgaatttgaaggaggagggtgattctaagacaccgtttacaaatac |
42377997 |
T |
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| Q |
306 |
ccacgtgaaggctcttctcctggtatgctacctttgtt |
343 |
Q |
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| T |
42377996 |
tcatgttaaggctctactcatggtatgctacttttgtt |
42377959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 486 - 566
Target Start/End: Complemental strand, 42377182 - 42377102
Alignment:
| Q |
486 |
aacaggacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaatgatgaacaaaccag |
566 |
Q |
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| T |
42377182 |
aacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatggcagaaatgatgaacaaaccag |
42377102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 477 - 561
Target Start/End: Complemental strand, 42387539 - 42387455
Alignment:
| Q |
477 |
gtttgtatgaacaggacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaatgatgaacaa |
561 |
Q |
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| T |
42387539 |
gtttatatgaacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatagcataaatgatggacaa |
42387455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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