View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10908_low_3 (Length: 581)
Name: NF10908_low_3
Description: NF10908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10908_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 259 - 574
Target Start/End: Complemental strand, 38265950 - 38265635
Alignment:
| Q |
259 |
gcgttgataaaggtcctttctataataaggagttgattccaacaaattaggattatacgaatcaaaaagactactcaaagaatcattatcatataaatta |
358 |
Q |
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| T |
38265950 |
gcgttgataaaggtcctttctataataaggagttgattccaacaaataaggattatacgaatcaaaaagactactcaaagaatcattatcatataaatta |
38265851 |
T |
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| Q |
359 |
atcctctccaagaaattaagagtttgatatgtaaaacgatcaacgacagaaacacccaaatccgaatcaaaatgatgtgaatacgaactctctcctttca |
458 |
Q |
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| T |
38265850 |
atcctctccaagaaattaagagtttgatatgtaaagcgatcaacgacagaaacacccaaatccaaatcagaatgatgtgaatacgaactctctcctttca |
38265751 |
T |
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| Q |
459 |
aactacttccaatagctaaaacaccaggtgaacgaaggtctgagaaaagagtagcagcttgacaagtatccaccattatcaacaactccttaaacctgtg |
558 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38265750 |
cactacttccaatagctaaaacaccaggtgaacgaaggtctgagaaaagagtagcagcttgacaagtatccaccattatcaacaactccttaaacctgtg |
38265651 |
T |
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| Q |
559 |
attctctttcatctca |
574 |
Q |
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|||||||||||||||| |
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| T |
38265650 |
attctctttcatctca |
38265635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 38266152 - 38265950
Alignment:
| Q |
16 |
aaaagaatcaatactttcaaatgtattcactttgctaacaatagtactccatagttgtccaactataccatcctcatcatcat---------ggtttctc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38266152 |
aaaagaatcaatactttcaaatgtattcactttgctaacaatagtactccatagttgtccaactataccatcctcatcatcatcatcatcatggtttctc |
38266053 |
T |
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| Q |
107 |
aaaattcttctatcattgtcagcatcgtcggagattgattgatccaaagacattatagttttagctcttcccccaaatttataggctgaatcggtgtcta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38266052 |
aaaattcttctatcattgtcagcatcgtcggagattgattgatccaaagacattatagttttagctcttcccccaaatttataggctgaatcggtgtcta |
38265953 |
T |
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| Q |
207 |
ttg |
209 |
Q |
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||| |
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| T |
38265952 |
ttg |
38265950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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