View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10908_low_6 (Length: 503)
Name: NF10908_low_6
Description: NF10908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10908_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 99 - 417
Target Start/End: Complemental strand, 52874070 - 52873752
Alignment:
| Q |
99 |
tatacattgagacaacataatagataaataagtgcatatgtatttttcaaatggtatataaattcgaatagaagtttcagaaattgaaatcccaaccnnn |
198 |
Q |
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| T |
52874070 |
tatacattgagacaacataatagataaataagtgcatatgtatttttcaaatggtatataaattcgaatagaagtttcagaaattgaaatcccaaccttt |
52873971 |
T |
|
| Q |
199 |
nnnnccagacttcaaaattttgttgagattatctatcacttcctctgttacttcgacaactggaattgaaatgtttattttctctgtagtatccttgggg |
298 |
Q |
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| T |
52873970 |
ttttccagacttcaaaattttgttgagattatctatcacttcctctgttacttcgacaactggaattgaaatgtttattttttctgtagtatccttgggg |
52873871 |
T |
|
| Q |
299 |
cagtccatctcaacaagctctgagnnnnnnnnnnnnnnnnnnnnnnngaacatatatataacaagtcaaattgcatggaatgtaaggtactttccaatta |
398 |
Q |
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| T |
52873870 |
cagtccatctcaacaagctctgagagaaaataaaaaacatttaaaaagaacatatatataacaagtcaaattgcatggaatgtaaggtactttccaatta |
52873771 |
T |
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| Q |
399 |
gcaaatagaaatgctaaca |
417 |
Q |
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| T |
52873770 |
gcaaatagaaatgctaaca |
52873752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 413 - 484
Target Start/End: Complemental strand, 52873709 - 52873638
Alignment:
| Q |
413 |
taacatggagaattaatagtttggaagaaaacgagggcatgaaaatgaggataaatatgatttggtgctgag |
484 |
Q |
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| T |
52873709 |
taacatggagaattaatagtttggaagaaaacgagggcatgaaaatgaggataaatatgatttggtgctgag |
52873638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 52874208 - 52874152
Alignment:
| Q |
1 |
ataacatactcgctacaagatacatgtctcgacacaactagttcaattaaccacgtg |
57 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52874208 |
ataatatactcgctacaagatacatgtctcgacacaactagttcaattaaccacgtg |
52874152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 52874118 - 52874085
Alignment:
| Q |
73 |
atatttcttatcatggttaaaagaattatacatt |
106 |
Q |
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| T |
52874118 |
atatttcttatcatggttaaaagaattatacatt |
52874085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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