View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10908_low_9 (Length: 380)
Name: NF10908_low_9
Description: NF10908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10908_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 7208873 - 7209237
Alignment:
| Q |
18 |
tcattcacactcatttcacaatcctagcctagaaaagacccacgatatatcaaactcatatgattattaatgactatgatatcttaataagaagattcag |
117 |
Q |
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| T |
7208873 |
tcattcacactcatttcacaatcctagcctagaaaagacccacgatatatcaaactcatatgattattaatgactatgatatcttaataagaagattcag |
7208972 |
T |
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| Q |
118 |
ataccctcaacagaaaacaaaacaaactaaatggaaaattttcatctctttcaaaaccaaaccattcttagctttgaactttgagctcaaactccaacat |
217 |
Q |
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| T |
7208973 |
ataccctcaacagaaaacaaaacaaactaaatggaaaattttcatctctttcaaaaccaaaccattcttagctttgaactttgagctcaaactccaacat |
7209072 |
T |
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| Q |
218 |
tcctaacttgcatagacaaacaaaatccaaacttcttctttagacaaacatgagtaactggttgggattttctcttactccacacatgaggattgatgaa |
317 |
Q |
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| T |
7209073 |
tccta----------acaaagaaaatccaaacatcttctttagacaaacatgagtaactggttaggattttctctcactccacacttgaggattgatgaa |
7209162 |
T |
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| Q |
318 |
gaatttggtacag------------aaaaccaaaaccatgtagctgaaggatcagaaataggaagaaactatgtt |
380 |
Q |
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| T |
7209163 |
gaatttggtacagaaaaccaaaaccaaaaccaaaaccatgtagctgaaggatcagaaataggaagaaactatgtt |
7209237 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 29260224 - 29260278
Alignment:
| Q |
145 |
taaatggaaaattttcatctctttcaaaaccaaaccattcttagctttgaacttt |
199 |
Q |
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| T |
29260224 |
taaatggaaactttttaactctttcaaaaccaaaccattctaatctttgaacttt |
29260278 |
T |
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