View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10909_high_10 (Length: 236)

Name: NF10909_high_10
Description: NF10909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10909_high_10
NF10909_high_10
[»] chr1 (2 HSPs)
chr1 (13-216)||(47301015-47301218)
chr1 (13-208)||(47303927-47304116)
[»] chr7 (1 HSPs)
chr7 (13-209)||(17841150-17841346)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 47301218 - 47301015
Alignment:
Q  13 gagcagagatgttggggttttgagagatgatgatgtctttggatggtgaatttgggtggtcgggattgggtggtactgtcggtgcttgccgtggacggtc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47301218 gagcagagatgttggggttttgagagatgatgatgtctttggatggtgaatttgggtggtcgggattgggtggtactgtcggtgcttgccgtggacggtc 47301119  T
Q  113 gacggtgccgtcgctgtagactgtgatataggtaggaatttctgagatgatgcgttttgttgcatcggtggtgatggatgccattgattcagagatgtta 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  47301118 gacggtgccgtcgctgtagactgtgatataggtaggaatttctgagatgatgtgttttgttgcatcggtggtgatggatgccattgattcagagttgtta 47301019  T
Q  213 gaaa 216  Q
    ||||    
T  47301018 gaaa 47301015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 47304116 - 47303927
Alignment:
Q  13 gagcagagatgttggggttttgagagatgatgatgtctttggatggtgaatttgggtggtcgggattgggtggtactgtcggtgcttgccgtggacggtc 112  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  47304116 gagcggagatattggggttttgagagatgatgatgtctttggatggtgagtttgggtggttgggattgggtggtaccgtcggtggttgccgtggacggtc 47304017  T
Q  113 gacggtgccgtcgctgtagactgtgatataggtaggaatttctgagatgatgcgttttgttgcatcggtggtgatggatgccattgattcagagat 208  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| | ||||||||||      ||||||||||||||||||    
T  47304016 gactgtgccgtcgctgtagactgtgatataggtaggaatttcagagataatgtgttttggtacatcggtggt------tgccattgattcagagat 47303927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 17841346 - 17841150
Alignment:
Q  13 gagcagagatgttggggttttgagagatgatgatgtctttggatggtgaatttgggtggtcgggattgggtggtactgtcggtgcttgccgtggacggtc 112  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||    
T  17841346 gagcggagatgttggggttttgagagatgatgatatctttggatggtgaatttgggtggtcgggattgggtgagacagtcggtgcttgccgtggacggtc 17841247  T
Q  113 gacggtgccgtcgctgtagactgtgatataggtaggaatttctgagatgatgcgttttgttgcatcggtggtgatggatgccattgattcagagatg 209  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||    
T  17841246 gacggtgccgtcgctgtagactgtgatgtaggtaggaatttcagagatgatgtgttttgttgtatctgtggtgatggatgccattgattcagagatg 17841150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University