View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10909_high_11 (Length: 217)
Name: NF10909_high_11
Description: NF10909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10909_high_11 |
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| [»] chr8 (9 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2011939 - 2011723
Alignment:
| Q |
1 |
ttcttgttaatagcttcttagaaatggaaatgggacctataaatgcattgacagaggaaggaagtggcaacccttctgtctatcctgttggacccatcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2011939 |
ttcttgttaatagcttcttagaaatggaaatgggacctataaatgcattgacagaggaaggaagtggcaacccttctgtctatcctgttggacccatcat |
2011840 |
T |
|
| Q |
101 |
ccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2011839 |
ccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggt |
2011740 |
T |
|
| Q |
201 |
agtggtggtacactttc |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
2011739 |
agtggtggtacactttc |
2011723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1964755 - 1964971
Alignment:
| Q |
1 |
ttcttgttaatagcttcttagaaatggaaatgggacctataaatgcattgacagaggaaggaagtggcaacccttctgtctatcctgttggacccatcat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1964755 |
ttcttgttaatagcttcttagaaatggaaatgggacctataaaagcaccgacagaggaaggaagtggcaacccttctgtgtatcctgttggacccatcat |
1964854 |
T |
|
| Q |
101 |
ccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggt |
200 |
Q |
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| | ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1964855 |
cgatacagtaacatgttctgaccgtgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggg |
1964954 |
T |
|
| Q |
201 |
agtggtggtacactttc |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
1964955 |
agtggtggtacactttc |
1964971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 1968694 - 1968907
Alignment:
| Q |
4 |
ttgttaatagcttcttagaaatggaaatgggacctataaatgcattgacagaggaaggaagtggcaacccttctgtctatcctgttggacccatcatcca |
103 |
Q |
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|||||||||||||| | ||| |||| ||||||||||||| |||| ||| |||||| ||||||| ||||||| | || |||||||||||||| || ||||| |
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| T |
1968694 |
ttgttaatagcttcctggaattggagatgggacctataagtgcaatgaaagaggagggaagtgacaaccctccagtgtatcctgttggaccaattatcca |
1968793 |
T |
|
| Q |
104 |
gacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagt |
203 |
Q |
| |
|
|||| |||| |||| | ||||||||||||||| |||||||||||| | ||||| || ||||| || |||| |||||||||||||| |||||||| ||| |
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| T |
1968794 |
aacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcagccttgctcagttttgtatgtatctttcgggagt |
1968893 |
T |
|
| Q |
204 |
ggtggtacactttc |
217 |
Q |
| |
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|||||||||||||| |
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| T |
1968894 |
ggtggtacactttc |
1968907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 2432980 - 2433163
Alignment:
| Q |
1 |
ttcttgttaatagcttcttagaaatggaaatgggacctataaatgcattgacagaggaaggaagtggcaacccttctgtctatcctgttggacccatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||| |||||||||| || ||| ||| |||||||||||||||||||| |
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| T |
2432980 |
ttcttgttaatagcttcttagaaatggaaaggggtcctataaaagcactgacagatgaaggaagtgaaaatcctcttgtgtatcctgttggacccatcat |
2433079 |
T |
|
| Q |
101 |
ccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagtttt |
184 |
Q |
| |
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||||||| ||||| |||||| |||||||||||| |||||||||||||||||||| || | |||||| |||| |||||||| |
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| T |
2433080 |
ccagacaataacaagttctgacgatgatgctaatatgttggagtgtctgtcatggttggatgaccaacaaccttgctcagtttt |
2433163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2004944 - 2004728
Alignment:
| Q |
1 |
ttcttgttaatagcttcttagaaatggaaatgggacctataaatgcattgacagaggaaggaagtggcaacccttctgtctatcctgttggacccatcat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||| ||||||| |||| ||| ||| |||||||||| |||||| |||| |||||||||||||||||||| |
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| T |
2004944 |
ttcttgttaatagcttcctagaaatggagatgggtcctataagtgcaatgaaagatgaaggaagtgaaaaccctcctgtgtatcctgttggacccatcat |
2004845 |
T |
|
| Q |
101 |
ccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggt |
200 |
Q |
| |
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|| ||| || | |||| | ||||| | | |||| ||||| ||||| ||||||| || ||||| ||| ||||||||||||||||||||||||| || |
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| T |
2004844 |
cccgacgatagaaagttccggtgatgctaatcatgggttggaatgtctaacatggttggataaacagcaaccttgttcagttttgtatgtgtcttttggg |
2004745 |
T |
|
| Q |
201 |
agtggtggtacactttc |
217 |
Q |
| |
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||||| ||||||||||| |
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| T |
2004744 |
agtggcggtacactttc |
2004728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2008324 - 2008108
Alignment:
| Q |
1 |
ttcttgttaatagcttcttagaaatggaaatgggacctataaatgcattgacagaggaaggaagtggcaacccttctgtctatcctgttggacccatcat |
100 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||| ||| ||| |||| ||| |||||| ||| ||| ||||||| | || |||||||||||||| || || |
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| T |
2008324 |
ttcttgttaatagcttcctagaaatagagatgggtcctctaagtgcaatgaaagaggagggaggtgacaaccctccagtgtatcctgttggacctattat |
2008225 |
T |
|
| Q |
101 |
ccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggt |
200 |
Q |
| |
|
| | |||| |||| |||| ||||||||||||||| |||||||||||| | ||||| || ||||| ||| ||||||| ||||||||||| ||||| || |
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|
| T |
2008224 |
cgaaacagaaacaaaatctggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcaaccttgttcggttttgtatgtatcttttggg |
2008125 |
T |
|
| Q |
201 |
agtggtggtacactttc |
217 |
Q |
| |
|
||||| ||||||||||| |
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| T |
2008124 |
agtggaggtacactttc |
2008108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1963091 - 1963307
Alignment:
| Q |
1 |
ttcttgttaatagcttcttagaaatggaaatgggacctataaatgcattgacagaggaaggaagtggcaacccttctgtctatcctgttggacccatcat |
100 |
Q |
| |
|
||||| ||||||||||| | ||||| |||| ||| |||||| | ||| ||||||| |||||||||| |||| | ||| ||| ||||||||||||| || |
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| T |
1963091 |
ttcttattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagatgaaggaagtgaaaaccttcttgtgtatgctgttggacccattat |
1963190 |
T |
|
| Q |
101 |
ccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggt |
200 |
Q |
| |
|
||| ||| ||||| |||| ||||||||||||| || ||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||| ||| |
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|
| T |
1963191 |
ccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctgacatggttggacaaacaatgtccttgttcagttttgtatgtttcttttggt |
1963290 |
T |
|
| Q |
201 |
agtggtggtacactttc |
217 |
Q |
| |
|
|||||||| |||||||| |
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|
| T |
1963291 |
agtggtggcacactttc |
1963307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2015338 - 2015122
Alignment:
| Q |
1 |
ttcttgttaatagcttcttagaaatggaaatgggacctataaatgcattgacagaggaaggaagtggcaacccttctgtctatcctgttggacccatcat |
100 |
Q |
| |
|
||||| ||||||| ||| ||||||| |||| || |||||| | ||| ||||||| |||||||||| |||| | ||| ||| ||||||||||||| || |
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|
| T |
2015338 |
ttcttattaatagtttcatagaaatcgaaaacggtcctatagaagcactgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattat |
2015239 |
T |
|
| Q |
101 |
ccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggt |
200 |
Q |
| |
|
||| ||| ||||| |||| ||||||||||||| || || |||||| ||||||| |||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
2015238 |
ccaaacactaacaacatctggtgatgatgctaataagtttgaatgtctggcatggttggacaaacaacggccttgttcagttctgtatgtgtctttcggg |
2015139 |
T |
|
| Q |
201 |
agtggtggtacactttc |
217 |
Q |
| |
|
|||||||| |||||||| |
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|
| T |
2015138 |
agtggtggaacactttc |
2015122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2018721 - 2018505
Alignment:
| Q |
1 |
ttcttgttaatagcttcttagaaatggaaatgggacctataaatgcattgacagaggaaggaagtggcaacccttctgtctatcctgttggacccatcat |
100 |
Q |
| |
|
||||| ||||||||||| ||||||| |||| || |||||| | ||| | ||||| || |||||||||||||| ||| ||| |||||||||| || || |
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| T |
2018721 |
ttcttattaatagcttcctagaaattgaaaaaggtcctatagaagcactcacagaagacagaagtggcaaccctgatgtttatgctgttggaccaattat |
2018622 |
T |
|
| Q |
101 |
ccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggt |
200 |
Q |
| |
|
||| || ||| || | |||||||| |||||| ||| |||||||| ||||||| |||||||| ||| ||||||||||||||||||| ||||| || |
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|
| T |
2018621 |
ccaaacgccaaccaaatcgggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttggg |
2018522 |
T |
|
| Q |
201 |
agtggtggtacactttc |
217 |
Q |
| |
|
|||||||| |||||||| |
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|
| T |
2018521 |
agtggtggcacactttc |
2018505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 5902276 - 5902480
Alignment:
| Q |
7 |
ttaatagcttcttagaaatggaaatgggacctataaatgcattgacagaggaaggaagtggcaacccttctgtctatcctgttggacccatcatccagac |
106 |
Q |
| |
|
||||||||||| | ||||| |||| || |||||| | ||| ||||||| ||||||||||| |||||| |||| || ||| |||||||||| ||||| || |
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|
| T |
5902276 |
ttaatagcttcctggaaattgaaaaaggtcctatagaagcactgacagaagaaggaagtggtaaccctgctgtgtaccctattggacccattatccaaac |
5902375 |
T |
|
| Q |
107 |
agtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggt |
206 |
Q |
| |
|
| ||||| |||| | || |||||| ||||||||||| |||||||| | ||||||||| ||||||||||||||||||| ||||| || |||||| |
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|
| T |
5902376 |
aagaacagaatctggtaat------aatggtatggagtgtctgacatggttacataaacaacaaccttgttcagttttgtatgtttcttttggaagtggt |
5902469 |
T |
|
| Q |
207 |
ggtacactttc |
217 |
Q |
| |
|
||| ||||||| |
|
|
| T |
5902470 |
ggtgcactttc |
5902480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 5905879 - 5905964
Alignment:
| Q |
132 |
aatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacactttc |
217 |
Q |
| |
|
|||||| |||||||| || |||||||||| ||||| || ||||||||||||||||||| ||||| || || |||||| ||||||| |
|
|
| T |
5905879 |
aatggtatggagtgtttgacatggttagataaacagcagccttgttcagttttgtatgtttcttttggaagcggtggtgcactttc |
5905964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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