View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10909_high_5 (Length: 293)

Name: NF10909_high_5
Description: NF10909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10909_high_5
NF10909_high_5
[»] chr7 (1 HSPs)
chr7 (19-275)||(3087119-3087376)
[»] chr6 (12 HSPs)
chr6 (22-223)||(4299050-4299251)
chr6 (23-219)||(4622843-4623039)
chr6 (22-223)||(4626653-4626854)
chr6 (151-219)||(4557956-4558024)
chr6 (22-72)||(4259534-4259584)
chr6 (33-219)||(4586349-4586535)
chr6 (167-213)||(4612957-4613003)
chr6 (32-88)||(4255985-4256041)
chr6 (22-59)||(4602494-4602531)
chr6 (34-93)||(3172455-3172514)
chr6 (162-219)||(4571814-4571871)
chr6 (161-213)||(4599011-4599063)
[»] chr8 (2 HSPs)
chr8 (151-219)||(16685519-16685587)
chr8 (33-125)||(20863170-20863262)
[»] chr5 (1 HSPs)
chr5 (22-81)||(24107077-24107136)
[»] scaffold0288 (1 HSPs)
scaffold0288 (29-93)||(3077-3141)
[»] scaffold0477 (2 HSPs)
scaffold0477 (170-211)||(3930-3971)
scaffold0477 (22-102)||(4039-4119)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 3087119 - 3087376
Alignment:
Q  19 cacagaatatagcgcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3087119 cacagaatatagcgcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgaca 3087218  T
Q  119 aattctaaaatgggatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  3087219 aattctaaaatgggatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactctggcgt 3087318  T
Q  219 c-taaaatctcatctgcttgtcataattatagaagaagtcaatagcttactaggaata 275  Q
    |  ||| |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  3087319 cagaaactctcatatgcttgtcataattatagaagaagtcaatagcttgctaggaata 3087376  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 4299251 - 4299050
Alignment:
Q  22 agaatatagcgcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaat 121  Q
    |||||| || ||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |||||||| || |||||  || |||||||| |||||    
T  4299251 agaatagagagcattcattacatcactctcaagttcatcataagtattaaaaacaatagcagatgctttgtgaaatctatctgccgcttcaatggcaaat 4299152  T
Q  122 tctaaaatgggatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtcta 221  Q
    ||||  |||  ||| ||| ||| |  |  |||||| | |||||  ||||| |||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  4299151 tctaccatgacatcatttggatttgtactccttataaagtcagttagatctttcaatcgaaagttctgcaatcctggaatacagtctagtttgatgtcta 4299052  T
Q  222 aa 223  Q
    ||    
T  4299051 aa 4299050  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 4622843 - 4623039
Alignment:
Q  23 gaatatagcgcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaatt 122  Q
    ||||| |||||||||||  ||||| |||||||||||| |||||| ||||| ||||||||||||| |||||| || |  ||  || ||||||||| |||||    
T  4622843 gaatagagcgcattcatcgcatcagtctcaagttcattataagtattaaaaataatagcagaggatttgtgaaatcgttctgccgcttcaatgagaaatt 4622942  T
Q  123 ctaaaatgggatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 219  Q
    |||  |||  ||| ||| | |||  || |||||| | |||||||| |||||| |  |||||||||| |||||| |||| ||||||||||| ||||||    
T  4622943 ctaccatgacatcatttggctctgtaatccttataaagtcaggcaaatcctttaaccgaaagttcttcaatccaggaacacagtctacttcggtgtc 4623039  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 4626653 - 4626854
Alignment:
Q  22 agaatatagcgcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaat 121  Q
    |||||| ||||||||||||||||||| |||||||||||| |||||||| || | |||||| || ||| |||| || |||||  || ||||||||| ||||    
T  4626653 agaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctctgtgaaatctatctgccgcttcaatgagaaat 4626752  T
Q  122 tctaaaatgggatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtcta 221  Q
    ||||  |||  ||| ||  ||| |     |||||| | || | | || |||||||| ||||||||||||||||| |||||||| |||| |||||||||||    
T  4626753 tctaccatgacatcattaggatttgttgtccttataaagttaagaaggtccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgtcta 4626852  T
Q  222 aa 223  Q
    ||    
T  4626853 aa 4626854  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 4557956 - 4558024
Alignment:
Q  151 ccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 219  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  4557956 ccttataaagtcaggcagatccttcagtcgaaagttctgcaatcctggaatacaatccactttagtgtc 4558024  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 4259584 - 4259534
Alignment:
Q  22 agaatatagcgcattcattacatcactctcaagttcatcataagtgttaaa 72  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  4259584 agaatagagcacattcattacatcactctcaagttcatcataagtgttaaa 4259534  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 219
Target Start/End: Original strand, 4586349 - 4586535
Alignment:
Q  33 cattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatccc--ccacttcaatgacaaattctaaaatg 130  Q
    |||| ||||||||  |||||||||||||| |||| ||||| |||| ||||||| |||||||  |||  | ||  |  ||||||||| ||||||||  ||     
T  4586349 catttattacatccttctcaagttcatcagaagtattaaaaataaaagcagagtctttgtg--agccgttcctgcgccttcaatgataaattctatgatc 4586446  T
Q  131 ggatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 219  Q
    | ||| ||| ||||   || |||||| | |||||||| |||||| ||||||||||||| |||||||||||||||||| ||||| |||||    
T  4586447 gaatcatttggatcagtaatccttataaagtcaggcaaatcctttagtcgaaagttctccaatcctggaatacagtccactttagtgtc 4586535  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 4613003 - 4612957
Alignment:
Q  167 agatccttcagtcgaaagttctgcaatcctggaatacagtctacttt 213  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||    
T  4613003 agatccttcagtcgaaagttctgcaatccttgaatacagtccacttt 4612957  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 4256041 - 4255985
Alignment:
Q  32 gcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggct 88  Q
    ||||||| |||||| ||||||||||||| |||||||||||| | |||||||||||||    
T  4256041 gcattcaatacatcgctctcaagttcattataagtgttaaaaacaatagcagaggct 4255985  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 4602494 - 4602531
Alignment:
Q  22 agaatatagcgcattcattacatcactctcaagttcat 59  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  4602494 agaatatagtgcattcattacatcactctcaagttcat 4602531  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 3172455 - 3172514
Alignment:
Q  34 attcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtg 93  Q
    |||||| ||||||||||||||||||| | ||||||| || | ||||||||| ||||||||    
T  3172455 attcataacatcactctcaagttcattagaagtgttgaaaacaatagcagaagctttgtg 3172514  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 4571814 - 4571871
Alignment:
Q  162 caggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 219  Q
    |||||| |||| ||||||||||||||| || |||||| |||||||| ||||| |||||    
T  4571814 caggcaaatccctcagtcgaaagttcttcagtcctggcatacagtccactttagtgtc 4571871  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 4599011 - 4599063
Alignment:
Q  161 tcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctacttt 213  Q
    ||||| ||||| |||||||||||||| |||| ||| |||||||| ||||||||    
T  4599011 tcaggaagatctttcagtcgaaagttttgcagtccaggaatacaatctacttt 4599063  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 16685587 - 16685519
Alignment:
Q  151 ccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 219  Q
    |||||| | |||||||||||||||||||||||  ||||||||||||||||||||||| ||||| |||||    
T  16685587 ccttataaagtcaggcagatccttcagtcgaatattctgcaatcctggaatacagtccactttagtgtc 16685519  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 20863262 - 20863170
Alignment:
Q  33 cattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattcta 125  Q
    ||||||| |||||||||||||| ||||   |||| || || | ||||||||||||| |||| || |||||  | |||||||||| ||||||||    
T  20863262 cattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaaatctatctactacttcaatgagaaattcta 20863170  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 24107077 - 24107136
Alignment:
Q  22 agaatatagcgcattcattacatcactctcaagttcatcataagtgttaaagataatagc 81  Q
    |||||| |||| |||||||||||||||||||||||||||||||| |||||| | ||||||    
T  24107077 agaatagagcgtattcattacatcactctcaagttcatcataagcgttaaaaacaatagc 24107136  T

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Target: scaffold0288 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 3141 - 3077
Alignment:
Q  29 agcgcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtg 93  Q
    |||||||||| |||||||||||||||||||| |||||||||||| | ||| ||||| ||| ||||    
T  3141 agcgcattcagtacatcactctcaagttcattataagtgttaaaaacaattgcagaagctctgtg 3077  T

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Target: scaffold0477 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 3971 - 3930
Alignment:
Q  170 tccttcagtcgaaagttctgcaatcctggaatacagtctact 211  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  3971 tccttcagccgaaagttctgcaatcctggaataccgtctact 3930  T

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Target: scaffold0477; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 4119 - 4039
Alignment:
Q  22 agaatatagcgcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatc 102  Q
    |||||| || ||||||| |||| | |||||||||||||| |||||||| || | |||||  ||||||||||| || |||||    
T  4119 agaatagagagcattcaatacaccgctctcaagttcatcgtaagtgttgaaaacaatagtcgaggctttgtggaatctatc 4039  T

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