View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10909_low_1 (Length: 505)
Name: NF10909_low_1
Description: NF10909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10909_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 13293305 - 13292809
Alignment:
| Q |
1 |
tctgcctgcaagctcataacctgcaccatacaaattgaataataataactcaaattattaatgtgttttgcttctgataaggcatcaaagatttattgta |
100 |
Q |
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| T |
13293305 |
tctgcctgcaagctcataacctgcaccatacaaattgaata-taataactcaaattattaatgtgttttgcttctgataaggcatcaaagatttattgta |
13293207 |
T |
|
| Q |
101 |
ttccaatgcactcaactaaggactaatcgctatcgccatgggtggctaacattgttttgacgccatcgaaaggtgaacctggtagcaccagatcgactct |
200 |
Q |
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| T |
13293206 |
ttccaatgcactcaactaaggactaatcgctatcgccatgggtggctaacattgttttgacgccatcgaaaggtgaacctggtagcaccagatcgactct |
13293107 |
T |
|
| Q |
201 |
ggagtgtcaaaagggtttggccttgcgaccactcaggttagaggttatttccaggttaaggcatatcaaacaatttcgatgtttatgttaaagaagacaa |
300 |
Q |
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| T |
13293106 |
ggagtgtc-aaagggtttggccttgcgaccactcaggttagaggttatttccaggttaaggcatatcaaacaatttcgatgtttatgttaaagaagacaa |
13293008 |
T |
|
| Q |
301 |
ttttagtactgaaaatatatacaagtaaccagtgattcatattttca------annnnnnnaacaagactaggctcttaattggaatcatatgaagttgt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||| | |
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| T |
13293007 |
ttttagtactgaaaatatatacaagtaaccagtgattcatattattattatttttttttttaataagactaggctcttaattggaatcatatgaagttct |
13292908 |
T |
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| Q |
395 |
taaa-aactttagaatataggaattctactagtatatgaaagggtt-tgaagtccagacccattaagtaaattattcatatcataccagtgttgtttgt |
491 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13292907 |
taaacaactttagaatataggaattctactagtatatgaaagggttatgaagtccagacccattaagtaaattattcatatcataccagtgttgtttgt |
13292809 |
T |
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