View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10909_low_12 (Length: 240)
Name: NF10909_low_12
Description: NF10909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10909_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 53070498 - 53070277
Alignment:
| Q |
1 |
ataagttgttagaaacatgtcatataagtgttggacactaacacgtgtcgtacaataggtcactatctcccgatcctcgagaaatgtgtttgttattcat |
100 |
Q |
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| T |
53070498 |
ataagttgttagaaacatatcatataagtgttggacactaacgcatgtcgtacaataggtcactatctcccgatcctcgaggagtgtgtctgttattcat |
53070399 |
T |
|
| Q |
101 |
aagtgatggagagcatttgtacacatttattcaagaatagtattttctaccaagaattaggcatagatgattggaccttcctttcacacccgttgtgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53070398 |
aagtgatggagagcatttgtacacatttattcaagaatagtattttctaccaagaaataggcttagatgattggaccttcctttcacacccgttgtgatt |
53070299 |
T |
|
| Q |
201 |
tgggtttaagtcataagttcta |
222 |
Q |
| |
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|||||| ||||| ||||||||| |
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| T |
53070298 |
tgggttaaagtcctaagttcta |
53070277 |
T |
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