View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10909_low_13 (Length: 236)

Name: NF10909_low_13
Description: NF10909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10909_low_13
NF10909_low_13
[»] chr1 (2 HSPs)
chr1 (13-216)||(47301015-47301218)
chr1 (13-208)||(47303927-47304116)
[»] chr7 (1 HSPs)
chr7 (13-209)||(17841150-17841346)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 47301218 - 47301015
Alignment:
Q  13 gagcagagatgttggggttttgagagatgatgatgtctttggatggtgaatttgggtggtcgggattgggtggtactgtcggtgcttgccgtggacggtc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47301218 gagcagagatgttggggttttgagagatgatgatgtctttggatggtgaatttgggtggtcgggattgggtggtactgtcggtgcttgccgtggacggtc 47301119  T
Q  113 gacggtgccgtcgctgtagactgtgatataggtaggaatttctgagatgatgcgttttgttgcatcggtggtgatggatgccattgattcagagatgtta 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  47301118 gacggtgccgtcgctgtagactgtgatataggtaggaatttctgagatgatgtgttttgttgcatcggtggtgatggatgccattgattcagagttgtta 47301019  T
Q  213 gaaa 216  Q
    ||||    
T  47301018 gaaa 47301015  T

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Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 47304116 - 47303927
Alignment:
Q  13 gagcagagatgttggggttttgagagatgatgatgtctttggatggtgaatttgggtggtcgggattgggtggtactgtcggtgcttgccgtggacggtc 112  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  47304116 gagcggagatattggggttttgagagatgatgatgtctttggatggtgagtttgggtggttgggattgggtggtaccgtcggtggttgccgtggacggtc 47304017  T
Q  113 gacggtgccgtcgctgtagactgtgatataggtaggaatttctgagatgatgcgttttgttgcatcggtggtgatggatgccattgattcagagat 208  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| | ||||||||||      ||||||||||||||||||    
T  47304016 gactgtgccgtcgctgtagactgtgatataggtaggaatttcagagataatgtgttttggtacatcggtggt------tgccattgattcagagat 47303927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 17841346 - 17841150
Alignment:
Q  13 gagcagagatgttggggttttgagagatgatgatgtctttggatggtgaatttgggtggtcgggattgggtggtactgtcggtgcttgccgtggacggtc 112  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||    
T  17841346 gagcggagatgttggggttttgagagatgatgatatctttggatggtgaatttgggtggtcgggattgggtgagacagtcggtgcttgccgtggacggtc 17841247  T
Q  113 gacggtgccgtcgctgtagactgtgatataggtaggaatttctgagatgatgcgttttgttgcatcggtggtgatggatgccattgattcagagatg 209  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||    
T  17841246 gacggtgccgtcgctgtagactgtgatgtaggtaggaatttcagagatgatgtgttttgttgtatctgtggtgatggatgccattgattcagagatg 17841150  T

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