View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10909_low_2 (Length: 434)
Name: NF10909_low_2
Description: NF10909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10909_low_2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 22 - 434
Target Start/End: Complemental strand, 3698735 - 3698323
Alignment:
| Q |
22 |
ccaacaatccaaacacctctgagaagtcctccattattagccctttgaaaaagtgctgatttttctaacacttgatcatcaggcattgaaccaggccaac |
121 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698735 |
ccaacaatccaaacacctttaagaagtcctccattattagccctttgaaaaagtgctgatttttctaacacttgatcatcaggcattgaaccaggccaac |
3698636 |
T |
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| Q |
122 |
caatacaaacatcagtgaaaacaccatttgtatcaacaactccttgaacagttattgaatatgaagtcttttgattcctctcagtatgtctcttgttaaa |
221 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698635 |
caatgcaaacatcagtgaaaacaccatttgtatcaacaactccttgaacagttattgaatatgaagtcttttgattcctctcagtatgtctcttgttaaa |
3698536 |
T |
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| Q |
222 |
ataatcagcaacactaatcttaggagctataattggaacatgtgatgtatacatggaccctacaacatttggaatacctgacataccctcaaactcattt |
321 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698535 |
ataagcagcaacactaatcttaggagctataattggaacatgtgatgtatacatggaccctacaacatttggaatacctgacataccctcaaactcattt |
3698436 |
T |
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| Q |
322 |
ttagtttttctcaaagaagtttcattaggccattgaagatacttaggcataagaacagttttaatagcagtgcaaacttcaagaacaagtttatgacaag |
421 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698435 |
ttaatttttctcaaagaagtttcattaggccattgaagatacttaggcataagaacagttttaatagcagtgcaaacttcaagaacaagtttatgacaag |
3698336 |
T |
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| Q |
422 |
ttgatatacctaa |
434 |
Q |
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| T |
3698335 |
ttgatatacctaa |
3698323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 3702427 - 3702011
Alignment:
| Q |
18 |
actaccaacaatccaaacacctctgagaagtcctccattattagccctttgaaaaagtgctgatttttctaacacttgatcatcaggcattgaaccaggc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702427 |
actaccaacaatccaaacacctctgagaagtcctccattattagccctttgaaaaagtgctgatttttctaacacttgatcatcaggcattgaaccaggc |
3702328 |
T |
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| Q |
118 |
caaccaatacaaacatcagtgaaaacaccatttgtatcaacaactccttgaacagttattgaatatgaagtcttttgattcctctcagtatgtctcttgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3702327 |
caaccaatacaaacatcagtgaaaacaccatttgtatcaacaacaccttgaacagttattgaatatgaagtcttttgattcctctcagtatgtcttctgt |
3702228 |
T |
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| Q |
218 |
taaaataatcagcaacactaatcttaggagctataattggaacatgtgatgtatacatggaccctacaacatttggaatacctgacataccctcaaactc |
317 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702227 |
taaaataatcagcaacactaatcttaggagctatgattggaacatgtgatgtatacatggaccctacaacatttggaatacctgacataccctcaaactc |
3702128 |
T |
|
| Q |
318 |
atttttagtttttctcaaagaagtttcattaggccattgaagatacttaggcataagaacagttttaatagcagtgcaaacttcaagaacaagtttatga |
417 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702127 |
attcttaatttttctcaaagaagtttcattaggccattgaagatacttaggcataagaacagttttaatagcagtgcaaacttcaagaacaagtttatga |
3702028 |
T |
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| Q |
418 |
caagttgatatacctaa |
434 |
Q |
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||||||||||||||||| |
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| T |
3702027 |
caagttgatatacctaa |
3702011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 17602581 - 17602503
Alignment:
| Q |
104 |
gcattgaaccaggccaaccaatacaaacatcagtgaaaacaccatttgtatcaacaactccttgaacagttattgaata |
182 |
Q |
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||||||| ||||||||||| ||||| |||||||| |||||||| || ||| || || ||||||||||||| |||||| |
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| T |
17602581 |
gcattgagccaggccaacctatacacacatcagtaaaaacacctttactatttaccacaccttgaacagttactgaata |
17602503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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