View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10909_low_9 (Length: 250)

Name: NF10909_low_9
Description: NF10909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10909_low_9
NF10909_low_9
[»] chr8 (11 HSPs)
chr8 (1-240)||(1965045-1965284)
chr8 (1-240)||(2011410-2011649)
chr8 (1-237)||(2004418-2004654)
chr8 (4-221)||(2007814-2008031)
chr8 (4-237)||(1968984-1969223)
chr8 (1-237)||(2436781-2437023)
chr8 (51-237)||(2014818-2015004)
chr8 (51-237)||(2018201-2018387)
chr8 (64-237)||(1963438-1963611)
chr8 (145-221)||(10201869-10201945)
chr8 (145-221)||(10208942-10209018)
[»] chr1 (2 HSPs)
chr1 (7-237)||(5902557-5902787)
chr1 (25-237)||(5906059-5906271)
[»] chr6 (3 HSPs)
chr6 (64-236)||(844977-845149)
chr6 (121-236)||(870261-870376)
chr6 (153-203)||(4299617-4299667)
[»] scaffold0184 (1 HSPs)
scaffold0184 (55-188)||(15204-15337)
[»] scaffold0078 (1 HSPs)
scaffold0078 (55-188)||(57507-57640)
[»] chr2 (1 HSPs)
chr2 (160-204)||(1351118-1351162)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1965045 - 1965284
Alignment:
Q  1 ccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1965045 ccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggaga 1965144  T
Q  101 aaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1965145 aaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttga 1965244  T
Q  201 aagtgtggtgcatggagtgccactaatcgcatggcctatg 240  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  1965245 aagtgtggtgcatggagtgccactaatcacatggcctatg 1965284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2011649 - 2011410
Alignment:
Q  1 ccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggaga 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| | |||  ||||  ||||||||||||||||||||||||||||||| || |||     
T  2011649 ccaagtagtagttcatctaatgcagcatatctttcagcacaaaatgatgttgatgctttacaatttttaccatctgggtttttggagagaaccaaagagg 2011550  T
Q  101 aaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||    
T  2011549 aaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcagttggcgggttcttgagtcactgtggttggagctcaacacttga 2011450  T
Q  201 aagtgtggtgcatggagtgccactaatcgcatggcctatg 240  Q
    ||||||||| ||||| |||||||||||| |||||||||||    
T  2011449 aagtgtggttcatggggtgccactaatcacatggcctatg 2011410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2004654 - 2004418
Alignment:
Q  1 ccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggaga 100  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||| | |||| ||| | | ||||| ||||| ||||| ||||||||||| |||||||    
T  2004654 ccaagtagtagttcatctagtgcaggatatttttcagcacaaaatgatgctgacacttggcagtttttgccatccgggttcttggagagaaccaaggaga 2004555  T
Q  101 aaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttga 200  Q
    ||||||||||||||||||||||||  || |||||||||||||| ||||| |  ||| | || |||||||||| ||| ||||| ||||| |||||||| ||    
T  2004554 aaggttttgtcattacatcatgggtgccgcagattcaaatcctaagtcacaactcagtcggcgggttcttgactcattgtggctggaattcaaccctaga 2004455  T
Q  201 aagtgtggtgcatggagtgccactaatcgcatggcct 237  Q
     |||||||||||||| |||||||||||  ||||||||    
T  2004454 gagtgtggtgcatggtgtgccactaataacatggcct 2004418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 2008031 - 2007814
Alignment:
Q  4 agtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaag 103  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||   |||| ||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  2008031 agtagcagttcatctagtgcaggatatctttcagcagaaaatgatattgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaag 2007932  T
Q  104 gttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaag 203  Q
    ||||||| |||||||||||||| || |||||||||||||| ||||| |  ||| |||| ||||||||||  || ||||| ||||| ||||||||||| ||    
T  2007931 gttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcagttggtgggttcttgacgcattgtggctggaattcaacccttgagag 2007832  T
Q  204 tgtggtgcatggagtgcc 221  Q
    ||||||||| || |||||    
T  2007831 tgtggtgcacggtgtgcc 2007814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 1968984 - 1969223
Alignment:
Q  4 agtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgg------gtttttggagagaacgaagg 97  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||   |||| ||||| | ||||||||||||||      ||| ||||||||||| ||||    
T  1968984 agtagcagttcatctagtgcaggatatctttcagcagaaaatgatattgacactttgcagtttttaccatctggatctgggttcttggagagaaccaagg 1969083  T
Q  98 agaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaaccct 197  Q
    ||||||||||||| |||||||||||||| || |||||||||||||| ||||| |  |||||||| || ||||||| ||| ||||| ||||| ||||||||    
T  1969084 agaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaaccct 1969183  T
Q  198 tgaaagtgtggtgcatggagtgccactaatcgcatggcct 237  Q
    ||| |||||| ||||||| |||||||||||| ||||||||    
T  1969184 tgagagtgtgttgcatggtgtgccactaatcacatggcct 1969223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2436781 - 2437023
Alignment:
Q  1 ccaagtagtagttcatctagtgcagcata----tc--tttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacga 94  Q
    |||| ||||||||||||||||||||||||    ||  |||||||||||||||| | |||||||||| |||||||||||| ||||||  | |||||||| |    
T  2436781 ccaaatagtagttcatctagtgcagcatacttttcagtttcagcacaaaatgatgttgaccctttgcaatttttaccatgtgggttcatagagagaacca 2436880  T
Q  95 aggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaac 194  Q
    ||||  ||||  | || ||| ||||||||||||| ||| |||||||||||||||| || ||| |||| || ||||||||||||||||| ||||| |||||    
T  2436881 aggatcaagggatggttattccatcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaac 2436980  T
Q  195 ccttgaaagtgtggtgcatggagtgccactaatcgcatggcct 237  Q
    |||||| |||||||||||||| |||||||||||| ||||||||    
T  2436981 ccttgagagtgtggtgcatggtgtgccactaatcacatggcct 2437023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 2015004 - 2014818
Alignment:
Q  51 tgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcat 150  Q
    |||||||||  |||||||||| || ||||| ||||||||||| |||||  ||||  | || ||| ||||||||||||| ||||||||||||||| ||||     
T  2015004 tgaccctttacaatttttaccttcagggttcttggagagaacaaaggaacaagggatggttattccatcatgggcaccacagattcaaatccttcgtcac 2014905  T
Q  151 agttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcct 237  Q
    |||||| |||| |||||||||| ||||||||||||||| ||||  ||||| |||||| ||||||| |||||||||||| ||||||||    
T  2014904 agttcagttggtgggttcttgactcactgtggttggaattcaatgcttgagagtgtgttgcatggtgtgccactaatcacatggcct 2014818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 2018387 - 2018201
Alignment:
Q  51 tgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcat 150  Q
    |||||||||  |||||||||| || ||||| ||||||||||  |||||  ||||  | || ||| ||||||||||||| ||||||||||||||| ||||     
T  2018387 tgaccctttacaatttttaccttcagggttcttggagagaaaaaaggaacaagggatggttattccatcatgggcaccacagattcaaatccttcgtcac 2018288  T
Q  151 agttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcct 237  Q
    |||||| |||| |||||||||| ||||||||||||||| ||||| ||||| |||||| ||||||| |||||||||||| ||||||||    
T  2018287 agttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcct 2018201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 64 - 237
Target Start/End: Original strand, 1963438 - 1963611
Alignment:
Q  64 tttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggag 163  Q
    ||||||||||||||||||||||||||||| |||||  ||||  | ||  || ||||||||||||| |||||||||||||||||||| ||||| ||||| |    
T  1963438 tttttaccatctgggtttttggagagaaccaaggaacaagggatggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtg 1963537  T
Q  164 ggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcct 237  Q
    |||| |||  ||| ||||||||||| ||||||||||| ||||||||| |||| |||||||||||| | ||||||    
T  1963538 ggtttttgtctcattgtggttggaattcaacccttgagagtgtggtgtatggtgtgccactaatcacttggcct 1963611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 10201945 - 10201869
Alignment:
Q  145 agtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgcc 221  Q
    |||||||  ||||||||||||||  ||||||| ||||||||||| ||||| ||||| ||||||||| |||| |||||    
T  10201945 agtcatatctcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc 10201869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 10209018 - 10208942
Alignment:
Q  145 agtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgcc 221  Q
    |||||||  ||||||||||||||  ||||||| ||||||||||| ||||| ||||| ||||||||| |||| |||||    
T  10209018 agtcatatctcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc 10208942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 5902557 - 5902787
Alignment:
Q  7 agtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggtt 106  Q
    ||||||||| | ||||  ||||||||||||||| ||||||| | ||| | |||| | ||||||||| ||||||| ||||||||||| |||||| ||||      
T  5902557 agtagttcagccagtggtgcatatctttcagcagaaaatgatgttgatcttttgcagtttttaccacctgggttcttggagagaaccaaggagcaaggga 5902656  T
Q  107 ttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgt 206  Q
    | || ||| |||||||||||||||||||| |||  |||||||| || ||| |||| || ||||||||||||||||| ||||| |||| |||||| |||||    
T  5902657 tggttattccatcatgggcacctcagattgaaacacttagtcacagatcagttggtggattcttgagtcactgtggctggaattcaatccttgagagtgt 5902756  T
Q  207 ggtgcatggagtgccactaatcgcatggcct 237  Q
    | ||||||| |||||||||||| ||||||||    
T  5902757 gatgcatggtgtgccactaatcacatggcct 5902787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 5906059 - 5906271
Alignment:
Q  25 gcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatggg 124  Q
    |||||||||||||||||||| || | ||| | || | |  |||||||||||||||| ||||||||||| |||||| ||||  | || ||| |||||||||    
T  5906059 gcatatctttcagcacaaaacgatgttgatctttcgcaggttttaccatctgggttcttggagagaaccaaggagcaaggaatggttattccatcatggg 5906158  T
Q  125 cacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccact 224  Q
    ||||||||||| ||||||||||||| |  ||| |||| || ||||||||||| ||||||||||  |||| |||||| || | | ||||||| ||||||||    
T  5906159 cacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaatccttgagagcgcgatgcatggtgtgccact 5906258  T
Q  225 aatcgcatggcct 237  Q
    |||| ||||||||    
T  5906259 aatcacatggcct 5906271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 236
Target Start/End: Complemental strand, 845149 - 844977
Alignment:
Q  64 tttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggag 163  Q
    |||||||||  ||| |||||||| ||||| || | ||||||||| ||  || |||  |||||||| || ||| |||| ||| |||||||||||||||| |    
T  845149 tttttaccaaatggttttttggaaagaacaaaagggaaaggtttagtagttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtg 845050  T
Q  164 ggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcc 236  Q
    |||| || | ||| ||||||||||| ||||| ||||||||||| ||  ||||| | ||| |||| ||||||||    
T  845049 ggtttttaactcattgtggttggaattcaacacttgaaagtgttgtaaatggaattccaataatagcatggcc 844977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 870376 - 870261
Alignment:
Q  121 tgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgc 220  Q
    |||||||| || ||| |||| ||| |||||||||||||||| ||||| || | ||| ||||||||||| ||||| ||||||||||| ||  ||||| | |    
T  870376 tgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgttgtaaatggaattc 870277  T
Q  221 cactaatcgcatggcc 236  Q
    || |||| ||||||||    
T  870276 caataatagcatggcc 870261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 4299617 - 4299667
Alignment:
Q  153 ttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaag 203  Q
    ||||||||| || ||||||| ||||||||| |||||||||||| |||||||    
T  4299617 ttcaattggtggattcttgactcactgtggatggaactcaaccattgaaag 4299667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 188
Target Start/End: Complemental strand, 15337 - 15204
Alignment:
Q  55 cctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagtt 154  Q
    |||||||||||||||||    ||||||||||| ||||| || || ||||||||| |  |  ||||||||||||||||  || |||| ||||  |||||||    
T  15337 cctttgaaatttttacctatagggtttttggaaagaaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagtt 15238  T
Q  155 caattggagggttcttgagtcactgtggttggaa 188  Q
    || |||| || || || ||||| |||||||||||    
T  15237 cagttggtggatttttaagtcattgtggttggaa 15204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 57507 - 57640
Alignment:
Q  55 cctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagtt 154  Q
    |||||||||||||||||    ||||||||||| ||||| || || ||||||||| |  |  ||||||||||||||||  || |||| ||||  |||||||    
T  57507 cctttgaaatttttacctatagggtttttggaaagaaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagtt 57606  T
Q  155 caattggagggttcttgagtcactgtggttggaa 188  Q
    || |||| || || || ||||| |||||||||||    
T  57607 cagttggtggatttttaagtcattgtggttggaa 57640  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 1351118 - 1351162
Alignment:
Q  160 ggagggttcttgagtcactgtggttggaactcaacccttgaaagt 204  Q
    |||||||| |||||||||||||||||||| |||||  ||||||||    
T  1351118 ggagggtttttgagtcactgtggttggaattcaacaattgaaagt 1351162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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