View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1090_high_4 (Length: 437)
Name: NF1090_high_4
Description: NF1090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1090_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 40 - 214
Target Start/End: Complemental strand, 19236045 - 19235875
Alignment:
| Q |
40 |
gttatttcttatggaccattttgtgtctgtctaggactctaggtattcaaatttgatttttctgaaatcagtctgttatgagagaaaatttcttgctagc |
139 |
Q |
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| T |
19236045 |
gttatttcttatggaccattttgtgtctgtctaggactctaggtattcaaatttgatttttctgaaaccagtct----tgagagaaaatttcttgctagc |
19235950 |
T |
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| Q |
140 |
attttggcaagcaatatgaaatattttggaatgattggattgaatgaattaaactcaaagtatgatgatcatttc |
214 |
Q |
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| T |
19235949 |
attttggcaagcaatatgaaagattttggaatgattggattgaatgaattaaactcaaagtatgatgatcatttc |
19235875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 293 - 427
Target Start/End: Complemental strand, 19235795 - 19235661
Alignment:
| Q |
293 |
aagtgcatgaatcccttaggctgttcatccttccattaccaaattaggatgatgctaaatgattttgatgtaatactttatgctgatggctatagagatt |
392 |
Q |
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| T |
19235795 |
aagtgcatgaatcccttaggctgttcatccttccattaccaaatcaggatgatgctaaatgattttgatgtaatactttatggtgatggctatagagatt |
19235696 |
T |
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| Q |
393 |
atttatatatccctgtaagcacttaatgacctttg |
427 |
Q |
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| T |
19235695 |
atttatatatccctgtaagcacttaatgacctttg |
19235661 |
T |
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