View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1090_low_1 (Length: 837)
Name: NF1090_low_1
Description: NF1090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1090_low_1 |
 | |
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| [»] scaffold0264 (1 HSPs) |
| | |
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| [»] scaffold0074 (1 HSPs) |
| | |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 360 - 705
Target Start/End: Complemental strand, 16324886 - 16324526
Alignment:
| Q |
360 |
aagtattaaacaaatcttaacataacaaaaaatgcaagttccttattgcttccatttaattcaatatatatagtaacgctagcagcaaaacttgttacat |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16324886 |
aagtattaaacaaatcttaacataacaaaaaatgcaagttccttattgcttccatttaattcaatatatatagtaacgctagcagcaaaacttgttacat |
16324787 |
T |
|
| Q |
460 |
acaacattgctttac-----------------ctcattctctcaatatcacaaaatgaagttaagttacccttcacttcctcttctcaccattttccttt |
542 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16324786 |
acaacattgctttacatgattccttgtcctccctcattctctcaat--cacaaaatgaagttaagttacccttcacttcctcttctcaccattttccttt |
16324689 |
T |
|
| Q |
543 |
tcctacttccttctttgatcaaatctcaaatgtgccaaagaaactgtggcaaagaaactctcaagtaccctttcggtagcggccccggttgcggcgaccc |
642 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16324688 |
tcctacttccttctttgatcaaatctcaaatgtgccaaagaaactgtggcaaagaaactctcaaataccctttcggtagcggccccggttgcggcgaccc |
16324589 |
T |
|
| Q |
643 |
tcgcttccaaccacatataacttgtagccaacaaaaactcaccttcacaacacacacaggttc |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16324588 |
tcgcttccaaccacatataacttgtagccaacaaaaactcaccttcacaacacacacaggttc |
16324526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 93 - 377
Target Start/End: Complemental strand, 16325189 - 16324905
Alignment:
| Q |
93 |
atccaaacgttttctaatagtctctttaatttggcgttgaaagttccaaatgcgcatctcaatgagtaacggtcatggaaaaagataaactagaaaactc |
192 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16325189 |
atccaaacattttctaatagtctctttaatttgacggtgaaagttccaaatgcgcatctcaatgagtaacggtcatggaaaaagataaactagaaaactc |
16325090 |
T |
|
| Q |
193 |
agctttcacgttgacattgttttatgtcacggttttgctaaacgcaacttcataccaaacatattctaagtaacttaaaacgcgacagagtacataaata |
292 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| |
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| T |
16325089 |
agctttcaccttgatattgttttatgtcacggttttgctaaacgcaacttcatactaaacatattctaagtaacttaaaacgtgatagagtacataaatc |
16324990 |
T |
|
| Q |
293 |
aaaaagccttacattatatcatatcacatataaaaataaatcacaaggcctagcaacatataatcaaaagtattaaacaaatctt |
377 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
16324989 |
aaaaagccttacattatattatatcacaaataaaaataaatcacaaggcctaacagcatataatcaaaagtattaaacaaatctt |
16324905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 9e-54; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 708 - 823
Target Start/End: Complemental strand, 20237608 - 20237493
Alignment:
| Q |
708 |
ctcgttcactggtacattatcaaatcagttatatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgat |
807 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20237608 |
ctcgttcactagtacattatcaaatcagttatatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgat |
20237509 |
T |
|
| Q |
808 |
aaacaagccttgtata |
823 |
Q |
| |
|
|||||| ||||||||| |
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|
| T |
20237508 |
aaacaaaccttgtata |
20237493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 708 - 823
Target Start/End: Complemental strand, 22131592 - 22131477
Alignment:
| Q |
708 |
ctcgttcactggtacattatcaaatcagttatatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgat |
807 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22131592 |
ctcgttcactagtacattatcaaatcagttatatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgat |
22131493 |
T |
|
| Q |
808 |
aaacaagccttgtata |
823 |
Q |
| |
|
|||||| ||||||||| |
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|
| T |
22131492 |
aaacaaaccttgtata |
22131477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 711 - 820
Target Start/End: Complemental strand, 18981327 - 18981218
Alignment:
| Q |
711 |
gttcactggtacattatcaaatcagttatatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgataaa |
810 |
Q |
| |
|
||||||| || ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
18981327 |
gttcactagtgcattatcaaatcaattatctcaacttgcgaatgatacaggggacagtgatgaaatgtatctgactaattcattaaaaatgaatgataca |
18981228 |
T |
|
| Q |
811 |
caagccttgt |
820 |
Q |
| |
|
||| |||||| |
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|
| T |
18981227 |
caaaccttgt |
18981218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 711 - 823
Target Start/End: Complemental strand, 20085692 - 20085580
Alignment:
| Q |
711 |
gttcactggtacattatcaaatcagttatatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgataaa |
810 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||| |||||| | |
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|
| T |
20085692 |
gttcactagtacattatcaaatcagttatctcaacttgcgaatgatacaggggacagtggtgaaagatataagactaattcattaaaactaaatgatgta |
20085593 |
T |
|
| Q |
811 |
caagccttgtata |
823 |
Q |
| |
|
||| ||||||||| |
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|
| T |
20085592 |
caaaccttgtata |
20085580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 711 - 823
Target Start/End: Original strand, 22205468 - 22205580
Alignment:
| Q |
711 |
gttcactggtacattatcaaatcagttatatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgataaa |
810 |
Q |
| |
|
||||||| |||| ||||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| | |
|
|
| T |
22205468 |
gttcactagtaccttatcgaatcagttatctcaacttgcgaatgatacaggggacagtgatgaaagatataagactaattcattaaaactgaatgatgta |
22205567 |
T |
|
| Q |
811 |
caagccttgtata |
823 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
22205568 |
caaaccttgtata |
22205580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 711 - 807
Target Start/End: Original strand, 24385682 - 24385780
Alignment:
| Q |
711 |
gttcactggtacattatcaaatcagttatatcaacttgcgaatgacacaggggacagt--gatgaaatgtatctgactaattcattaaaactgaatgat |
807 |
Q |
| |
|
||||||| |||||||| ||||||||| |||||||||| ||||| ||||| |||||| | ||||| ||| |||||||||||||||||| |||||| |
|
|
| T |
24385682 |
gttcactaatacattatggaatcagttaaatcaacttgccaatgatacaggagacagtacggtgaaagatataagactaattcattaaaactaaatgat |
24385780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 73; Significance: 7e-33; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 711 - 823
Target Start/End: Complemental strand, 15645 - 15533
Alignment:
| Q |
711 |
gttcactggtacattatcaaatcagttatatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgataaa |
810 |
Q |
| |
|
||||||| |||| ||||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
15645 |
gttcactagtaccttatcgaatcagttatctcaacttgcgaatgatacaggggacagtgatgaaagatataagactaattcattaaaactgaatgataaa |
15546 |
T |
|
| Q |
811 |
caagccttgtata |
823 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
15545 |
caaaccttgtata |
15533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 711 - 823
Target Start/End: Original strand, 48297 - 48409
Alignment:
| Q |
711 |
gttcactggtacattatcaaatcagttatatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgataaa |
810 |
Q |
| |
|
||||||| |||||||||| |||||||||| ||||||||| ||||| ||||||||||||||||| | ||| |||||||||||||||||||||||||||| |
|
|
| T |
48297 |
gttcactagtacattatcgaatcagttatctcaacttgcaaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgataaa |
48396 |
T |
|
| Q |
811 |
caagccttgtata |
823 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
48397 |
caaaccttgtata |
48409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 711 - 823
Target Start/End: Original strand, 5824 - 5936
Alignment:
| Q |
711 |
gttcactggtacattatcaaatcagttatatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgataaa |
810 |
Q |
| |
|
||||||| |||||||||| ||| |||||| ||||||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||||||| | |
|
|
| T |
5824 |
gttcactagtacattatccaatgagttatctcaacttgcgaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgatgta |
5923 |
T |
|
| Q |
811 |
caagccttgtata |
823 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
5924 |
caaaccttgtata |
5936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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