View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1090_low_10 (Length: 417)
Name: NF1090_low_10
Description: NF1090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1090_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 7 - 389
Target Start/End: Original strand, 39170153 - 39170529
Alignment:
| Q |
7 |
ggagcagagacaagcatatgtgattgttcattctaataggtagtgcttaccaaacctttcataattctggtgacctttttagagtccaactcacttaaat |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
39170153 |
ggagcagaaacaagcatatgtgattgttcattctaataggtagtgcttaccaaacctttcataattttggtgacctttttagagttcaactcacttaaat |
39170252 |
T |
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| Q |
107 |
ttccttattccaaaattatatgactcatcttaaaaaatagaaaatacaatacttagctaagacaatcacatcttaaactagtcatcaagttttttactct |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39170253 |
ttccttattccaaaattatatgactcatcttaaaaaatagaaaatacgatacttagctaagacaatcacatcttaaactagtcatcaagttttttactct |
39170352 |
T |
|
| Q |
207 |
cccactttctattactcaattcgtttttcatcaaatagcagtgattttgtttggggaaagaaataataggcacttcgaccaccatgattatgggtttttg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39170353 |
cccactttctattactcaattcgtttttcatcaaatggcag------tgtttggggaaagaaataataggcacttcgaccaccatgattatgggtttttg |
39170446 |
T |
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| Q |
307 |
tctccttgatgttaattgtgatccattatttaattaaaacaatgggaaagttagtctatttattgcaagtggacataatggtt |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39170447 |
tctccttgatgttaattgtgatccattatttaattaaaacaatgggaaagttagtctatttattgcaagtggacataatggtt |
39170529 |
T |
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