View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1090_low_11 (Length: 411)
Name: NF1090_low_11
Description: NF1090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1090_low_11 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
| [»] scaffold0902 (2 HSPs) |
| | |
|
| [»] scaffold1801 (1 HSPs) |
| | |
|
| [»] scaffold1118 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 20421508 - 20421196
Alignment:
| Q |
9 |
caacaatatcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaa |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20421508 |
caacaaaatcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaacccaaaatgcaa |
20421409 |
T |
|
| Q |
109 |
aaatacagaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaactttatcacaacacatgttcactctagtactatgccaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20421408 |
aaatacagaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttcaaactttatcacaacacatgttcactctagtactatgccaa |
20421309 |
T |
|
| Q |
209 |
tgttagaagacttcatcaattcccctggacctaaacactaagnnnnnnnntctataacaagaaaaattcaaatcagttactctgctgaaattcattttca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20421308 |
tgttagaagacttcatcaattcccctggacctaaacactaagaaaaaaaatctataacaagaaaaattcaaatcagttactctgctgaaattcattttca |
20421209 |
T |
|
| Q |
309 |
tagtgaaagtgat |
321 |
Q |
| |
|
||||||||||||| |
|
|
| T |
20421208 |
tagtgaaagtgat |
20421196 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 9884407 - 9884718
Alignment:
| Q |
9 |
caacaatatcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaa |
108 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9884407 |
caacaaaatcaaaccatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaacccaaaatgcaa |
9884506 |
T |
|
| Q |
109 |
aaatacagaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaa-ctttatcacaacacatgttcactctagtactatgcca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
9884507 |
aaatacagaatttcattacaaagaaaccaaagaatcaacatacgaacacacatattatgaaagctttatcacagcacatgttcactctagtactaggcca |
9884606 |
T |
|
| Q |
208 |
atgttagaagacttcatcaattcccctggacctaaacactaagnnnnnnnntctataacaagaaaaattcaaatcagttactctgctgaaattcattttc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9884607 |
atgttagaagacttcatcaattcccctggacctaaacactaagaaaaaaaatctataacaagaaaaattcaaatcagttactctgctgaaattcattttc |
9884706 |
T |
|
| Q |
308 |
atagtgaaagtg |
319 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9884707 |
atagtgaaagtg |
9884718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 14316166 - 14316261
Alignment:
| Q |
38 |
ctaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaaatacagaatttcattacaaagaaa |
134 |
Q |
| |
|
|||||||| |||||| |||||||| ||||| ||||||| ||||||||||| ||||| || |||||||||||||| |||||| | ||||||||| |
|
|
| T |
14316166 |
ctaatccttaacaaatcaaatgaactctttt-caatttcgtggcaatggtttaaagaaaccctaaatgcaaaaatactaaatttcctcacaaagaaa |
14316261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 14247683 - 14247731
Alignment:
| Q |
86 |
gtttagagaaatccaaaatgcaaaaatacagaatttcattacaaagaaa |
134 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||| ||||||||| |
|
|
| T |
14247683 |
gtttagagaaaccctaaatgcaaaaatactaaatttcatcacaaagaaa |
14247731 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 9 - 308
Target Start/End: Complemental strand, 135341 - 135034
Alignment:
| Q |
9 |
caacaatatcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaa-tgc- |
106 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||||||||||||||| |||||| ||| |
|
|
| T |
135341 |
caacaaaatcaaaccatatcacagatcaactaatcctaaacaaaacaaattaa-cctttttcaatttgtcggcaatggtttagagaaacccaaaaatgcg |
135243 |
T |
|
| Q |
107 |
aaaaatacagaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaa-ctttatcacaacacatgttcactctagtactatgc |
205 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||||| |||| ||||| ||||||||||||||||||||| || |
|
|
| T |
135242 |
aaaaatacagaatttcatcacaaagaaaccaaagaatcagcataagaacacacgtattatgaaagctttttcacagcacatgttcactctagtactaggc |
135143 |
T |
|
| Q |
206 |
caatgttagaagacttcatcaattcccctggacctaaacact------aagnnnnnnnntctataacaagaaaaattcaaatcagttactctgctgaaat |
299 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||| | || ||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
135142 |
caatgttagaagacgtcatcaattcccctggacataaacagtaaaaaaaaaaaaaaaaatctataacaagaaaaatacaaaccagttactctgctgaaat |
135043 |
T |
|
| Q |
300 |
tcattttca |
308 |
Q |
| |
|
||||||||| |
|
|
| T |
135042 |
tcattttca |
135034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 11955047 - 11954993
Alignment:
| Q |
19 |
aaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaat |
73 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11955047 |
aaaccatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaat |
11954993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 15607298 - 15607059
Alignment:
| Q |
9 |
caacaatatcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaa |
108 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||||||||||||| || |||||||||| ||||||||||||| ||||| |||||||||| ||||||| | | |
|
|
| T |
15607298 |
caacaaaatcaaaccatattacagatcaactaatcctaaactaagcaaatgaaacatttttcaatttcttggcaataatttagagaaaaccaaaatacga |
15607199 |
T |
|
| Q |
109 |
aaatacagaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaactttatcacaacacatgttcactctagtactatgccaa |
208 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||| ||| ||| | || ||||||| |||||||| | | ||| |
|
|
| T |
15607198 |
aaatacagaatttcatcacaaagaaaccaaagaatcagcatatcaacacacatattatgaa--tttttcaaagcatatgttcaatctagtacaaggacaa |
15607101 |
T |
|
| Q |
209 |
tgttagaagacttcatcaattcccctggacctaaacactaag |
250 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15607100 |
tgtcagaagacttcatcaattcccctggacctaaacagtaag |
15607059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 112166 - 111987
Alignment:
| Q |
9 |
caacaatatcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaa |
108 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| | ||| |
|
|
| T |
112166 |
caacaaaatcaaaccatatcacatatcaactaatcctaaacaaaacaaattaaacctttttcaatttatcggcaatggtttagagaaacc-------caa |
112074 |
T |
|
| Q |
109 |
aaatacagaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaa-ctttatcacaacacatgttcactc |
194 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||||| |||| ||||| ||||||||||||| |
|
|
| T |
112073 |
aaatacagaatttcatcacaaagaaaccaaagaatcagcataagaacacacgtattatgaaagctttttcacagcacatgttcactc |
111987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 195 - 308
Target Start/End: Complemental strand, 111962 - 111849
Alignment:
| Q |
195 |
tagtactatgccaatgttagaagacttcatcaattcccctggacctaaacactaagnnnnnnnntctataacaagaaaaattcaaatcagttactctgct |
294 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
111962 |
tagtactaggccaatgttagaagacttcatcaattcccctggacataaacaataaaaaaaataatctataacaagaaaaatacaaattagttactctgct |
111863 |
T |
|
| Q |
295 |
gaaattcattttca |
308 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
111862 |
gaaattcattttca |
111849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 36909898 - 36910104
Alignment:
| Q |
18 |
caaactatatcacagatcaactaatccta--aacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaaataca |
115 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| ||||| ||||||| ||| |||||||| |||||||| |
|
|
| T |
36909898 |
caaaccatatcacagatcacctaatcctataaacaaaacaaatgaaacccttttcaatttcttggcaatagtttagaaaaacccaaaatgtaaaaatact |
36909997 |
T |
|
| Q |
116 |
gaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaactttatcacaacacatgttcactctagtactatgccaatgttaga |
215 |
Q |
| |
|
|||||||| ||||||||||| |||| || | || |||||| | ||| || |||||| ||| ||| ||||||| ||||||||||||| |||| | | |
|
|
| T |
36909998 |
aaatttcatagcaaagaaaccatagaagcagcttataaacacagaaattatg-aactttttcaaaacgcatgttcgatctagtactatgcaaatgcaata |
36910096 |
T |
|
| Q |
216 |
agacttca |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
36910097 |
agacttca |
36910104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 2089 - 2146
Alignment:
| Q |
193 |
tctagtactatgccaatgttagaagacttcatcaattcccctggacctaaacactaag |
250 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||||||||||| |||||||||| |||| |
|
|
| T |
2089 |
tctagtactaggccaatgtcagaagtcttcatcaattcccctagacctaaacagtaag |
2146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 1991 - 2053
Alignment:
| Q |
80 |
gcaatggtttagagaaatccaaaatgcaaaaatacagaatttcattacaaagaaaccaaagaa |
142 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | ||| |||| ||||| || |||||||| |
|
|
| T |
1991 |
gcaatggtttagagaaacccaaaatgcaaaaattctaaatatcatgacaaaaaacccaaagaa |
2053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1801 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1801
Description:
Target: scaffold1801; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 809 - 748
Alignment:
| Q |
81 |
caatggtttagagaaatccaaaatgcaaaaatacagaatttcattacaaagaaaccaaagaa |
142 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| ||||| || ||| ||||||||||||| |
|
|
| T |
809 |
caatggtttagaaaaacccaaaatgcaaaaatactaaattttatcacagagaaaccaaagaa |
748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold1118
Description:
Target: scaffold1118; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 2176 - 2278
Alignment:
| Q |
38 |
ctaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaaatac--agaatttcattacaaagaaac |
135 |
Q |
| |
|
|||||||||||| || |||||||| ||||| ||||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||| |
|
|
| T |
2176 |
ctaatcctaaacgaatcaaatgaactctttt-caatttcgtgacaatggtttagagaaacacaaaatgcaaaaatactataaatttcatcacaaagaaac |
2274 |
T |
|
| Q |
136 |
caaa |
139 |
Q |
| |
|
|||| |
|
|
| T |
2275 |
caaa |
2278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 2309 - 2345
Alignment:
| Q |
204 |
gccaatgttagaagacttcatcaattcccctggacct |
240 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
2309 |
gccaatgtaagaagacttcatcaattcccctagacct |
2345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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