View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1090_low_14 (Length: 384)
Name: NF1090_low_14
Description: NF1090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1090_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 97 - 318
Target Start/End: Original strand, 12229331 - 12229552
Alignment:
| Q |
97 |
gaaacacatttgtcacggttcattatgacggaagcaataatgaagtgagcaccacgaaacttgattctgaaggcggaagttatcctacatggaacgagaa |
196 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12229331 |
gaaacacatttgtcacggttcaatgtgacggaagcaataatgaagtgagcaccacgaaacttgattctgaaggcggaagttatcctacatggaacgagaa |
12229430 |
T |
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| Q |
197 |
ggtagtgatcgacgtgccattacatgcaaggtttgttacaatagaggtgaagtacaaaactagaggaagtagtagtaatagtgttggaatagctagagta |
296 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12229431 |
ggtagtgatcgacatgccattacatgcaaggttcgttacaatagaggtgaagtacaaaactagaggaagtagtagtaatagtgttggaatagctagagta |
12229530 |
T |
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| Q |
297 |
cctgtttccgatattcttggag |
318 |
Q |
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|||||||||||| || |||||| |
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| T |
12229531 |
cctgtttccgattttgttggag |
12229552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 97 - 318
Target Start/End: Original strand, 12238866 - 12239087
Alignment:
| Q |
97 |
gaaacacatttgtcacggttcattatgacggaagcaataatgaagtgagcaccacgaaacttgattctgaaggcggaagttatcctacatggaacgagaa |
196 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12238866 |
gaaacacatttgtcacggttcaatgtgacggaagcaataatgaagtgagcaccacgaaacttgattctgaaggcggaagttatcctacatggaacgagaa |
12238965 |
T |
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| Q |
197 |
ggtagtgatcgacgtgccattacatgcaaggtttgttacaatagaggtgaagtacaaaactagaggaagtagtagtaatagtgttggaatagctagagta |
296 |
Q |
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| T |
12238966 |
ggtagtgatcgacgtgccattacatgcaaggttcgttacaatagaggtgaagtacaaaactagaggaagtagtagtaatagtgttggaatggctagaata |
12239065 |
T |
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| Q |
297 |
cctgtttccgatattcttggag |
318 |
Q |
| |
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|| ||||||||| || |||||| |
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| T |
12239066 |
ccggtttccgattttgttggag |
12239087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 97 - 318
Target Start/End: Original strand, 12235381 - 12235599
Alignment:
| Q |
97 |
gaaacacatttgtcacggttcattatgacggaagcaataatgaagtgagcaccacgaaacttgattctgaaggcggaagttatcctacatggaacgagaa |
196 |
Q |
| |
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||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12235381 |
gaaacacatttgtcatggttcaatgtgacggaagcaataatgaagtgagcaccacgaaacttgattctgaaggcggaagttatcctacatggaacgagaa |
12235480 |
T |
|
| Q |
197 |
ggtagtgatcgacgtgccattacatgcaaggtttgttacaatagaggtgaagtacaaaactagaggaagtagtagtaatagtgttggaatagctagagta |
296 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
12235481 |
ggtagtgatcgacgtgccattacatgcaaggttcgtaacaatagaggtgaagtacaaaacaagagga---agtagtaatagtgttggaatagctagagta |
12235577 |
T |
|
| Q |
297 |
cctgtttccgatattcttggag |
318 |
Q |
| |
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|||||||||||| || |||||| |
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| T |
12235578 |
cctgtttccgattttgttggag |
12235599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 99 - 318
Target Start/End: Original strand, 12245409 - 12245628
Alignment:
| Q |
99 |
aacacatttgtcacggttcattatgacggaagcaataatgaagtgagcaccacgaaacttgattctgaaggcggaagttatcctacatggaacgagaagg |
198 |
Q |
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|||||||| || |||||||| | |||||||||||| | |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |
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| T |
12245409 |
aacacattcgttacggttcaatgtgacggaagcaacagggaagtgagcaccacgaaacttgattccgaaggaggaagttaccctacatggaacgagaagt |
12245508 |
T |
|
| Q |
199 |
tagtgatcgacgtgccattacatgcaaggtttgttacaatagaggtgaagtacaaaactagaggaagtagtagtaatagtgttggaatagctagagtacc |
298 |
Q |
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| || || || |||||||||||||||||||| | ||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||| |||| |
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| T |
12245509 |
tggtaatggatgtgccattacatgcaaggttcctaacaatagaggtgaagtacaaaacaagaggtagtagtagcaatagtgttggaatggctagaatacc |
12245608 |
T |
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| Q |
299 |
tgtttccgatattcttggag |
318 |
Q |
| |
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|||||||||| ||||||||| |
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| T |
12245609 |
tgtttccgattttcttggag |
12245628 |
T |
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