View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1090_low_2 (Length: 628)
Name: NF1090_low_2
Description: NF1090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1090_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 29 - 628
Target Start/End: Complemental strand, 39937142 - 39936543
Alignment:
| Q |
29 |
atctacctgatttgctgcttgcattctggatgaaccaggtgttggaacatgcggcatatggaaaggaggcatcgcgaaccttggtcccaaattcgcggct |
128 |
Q |
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| T |
39937142 |
atctacctgatttgctgcttgcattctggatgaaccaggtgttggaacatgcggcatatggaaaggaggcatcgcgaaccttggtcccaaatttgcggct |
39937043 |
T |
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| Q |
129 |
gcaggcaaagcagaaccggataacatattgggaaatggcattactggtctgtttattcccatttccatacccatccccattcccattccaaccgttggca |
228 |
Q |
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| T |
39937042 |
gcaggcaaagcagaaccggataacatattgggaaatggcattactggtctgtttattcccatttccatacccatccccattcccattccaaccgttggca |
39936943 |
T |
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| Q |
229 |
tatactgctggattccaggaaacatcataggtaccatgccacatcccatggacatcatctgcataagttatactctctgtttcagaaatgaaactacatg |
328 |
Q |
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| T |
39936942 |
tatactgctggattccaggaaacatcataggtaccatgccacatcccatggacatcatctgcataagttgtactctctgtttcagaaatgaaactacatg |
39936843 |
T |
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| Q |
329 |
accaacttgctactagatagtggcatgaccttttgttaaggtcacaaatatatagatgtcatttctaatcaactgaattgcttgtgtaatgttccaccac |
428 |
Q |
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| T |
39936842 |
accaacttgctactagatagtggcatgaccttttgttaaggtcacaaatatatagatgtcatttctaatcaactgaattgcttgtgtaatgttccaccac |
39936743 |
T |
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| Q |
429 |
tggctgatggtggcatggtgcaagcttactagggtatcttgtttaacaaacaatttattaaatgagcagatgctaagtttatccgcctaaacaatttatg |
528 |
Q |
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| T |
39936742 |
tggccgatggtggcatggtgcaagcttactagggtatcttgtttaacaaacaatttattaaatgagcagatgctaagtttatccgcctaaacaatttatg |
39936643 |
T |
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| Q |
529 |
aacatagagtataatatactacttgaaaatgaatttataatacaaactcaaggtgaggaaaaactgaagaatgtgttcacccaaaaaagaataatctacc |
628 |
Q |
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| T |
39936642 |
aacatagagtataatatactacttgaaaatgaatttataatacaaactcaaggtgaggaaaaactgaagaatgtgttcacccaaaaaagaagaatctacc |
39936543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 150 - 294
Target Start/End: Original strand, 29729995 - 29730151
Alignment:
| Q |
150 |
aacatattgggaaatggcattactggtctgtttattcccatttccat------------acccatccccattcccattccaaccgttggcatatactgct |
237 |
Q |
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| T |
29729995 |
aacatattaggaaatggcatcactggtctgttcattcccattcccatttccatccctaaacccattcccatccccattcccatcgccggcataaattgct |
29730094 |
T |
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| Q |
238 |
ggattccaggaaacatcataggtaccatgccacatcccatggacatcatctgcataa |
294 |
Q |
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| T |
29730095 |
gaattccaggaaacatcataggtaccatgccacatcccatggacatcatctgcataa |
29730151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 29729863 - 29729948
Alignment:
| Q |
36 |
tgatttgctgcttgcattctggatgaaccaggtgttg------gaacatgcggcatatggaaaggaggcatcgcgaaccttggtcc |
115 |
Q |
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| T |
29729863 |
tgattttctgcttgcattctggatgaatcaggtgcagctgcaggaacatggggcacatggaaaggaggcatagcgaaccttggtcc |
29729948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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