View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1090_low_21 (Length: 287)

Name: NF1090_low_21
Description: NF1090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1090_low_21
NF1090_low_21
[»] chr5 (2 HSPs)
chr5 (116-279)||(29771456-29771619)
chr5 (57-117)||(14622070-14622130)
[»] chr4 (2 HSPs)
chr4 (51-116)||(7414310-7414375)
chr4 (51-116)||(7460391-7460456)
[»] chr8 (1 HSPs)
chr8 (51-117)||(557624-557690)
[»] chr2 (1 HSPs)
chr2 (51-117)||(15579432-15579497)
[»] chr3 (2 HSPs)
chr3 (51-124)||(48149999-48150071)
chr3 (51-111)||(42439926-42439985)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 116 - 279
Target Start/End: Complemental strand, 29771619 - 29771456
Alignment:
Q  116 ttaaattatttgtctatatgattacttacattgattatttgtaaatttatgtacccaggctttaaaaggnnnnnnntaatactagattgtttctttagaa 215  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||    
T  29771619 ttaaattatttgtctatatgattacttgcattgactatttgtaaatttatgtacccaagctttaaaaggaaaaaaataatactagattgtttctttagaa 29771520  T
Q  216 gtttggatgtcgggcatcatttattactaagaagtaactgaaaaccataccatattcttggaca 279  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||    
T  29771519 gtttggatgtcgggcatcatttattactaagaaataactgaaaaccataccatttttttggaca 29771456  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 14622070 - 14622130
Alignment:
Q  57 tgattgaatgtgtcgtacaatttcgtgcattgactctgtcggactatttagcaacactctt 117  Q
    ||||||||  |||||||||||||||||| |||| |||||||| |||| |||||||||||||    
T  14622070 tgattgaacatgtcgtacaatttcgtgctttgaatctgtcgggctatatagcaacactctt 14622130  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 7414375 - 7414310
Alignment:
Q  51 agcctatgattgaatgtgtcgtacaatttcgtgcattgactctgtcggactatttagcaacactct 116  Q
    ||||||||||||||  |||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  7414375 agcctatgattgaacatgtcgtacaatttcgtgcgttgaatctgtcggactatttagcaacactct 7414310  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 7460456 - 7460391
Alignment:
Q  51 agcctatgattgaatgtgtcgtacaatttcgtgcattgactctgtcggactatttagcaacactct 116  Q
    ||||||||||||||  |||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  7460456 agcctatgattgaacatgtcgtacaatttcgtgcgttgaatctgtcggactatttagcaacactct 7460391  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 557624 - 557690
Alignment:
Q  51 agcctatgattgaatgtgtcgtacaatttcgtgcattgactctgtcggactatttagcaacactctt 117  Q
    ||||||||||||||  |||||| ||||||||||| |||| |||||| | ||||||||||||||||||    
T  557624 agcctatgattgaacatgtcgtgcaatttcgtgcgttgaatctgtcaggctatttagcaacactctt 557690  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 15579497 - 15579432
Alignment:
Q  51 agcctatgattgaatgtgtcgtacaatttcgtgcattgactctgtcggactatttagcaacactctt 117  Q
    ||||||||||||||  |||||| ||||||||||| |||| | |||||| |||||||||||| |||||    
T  15579497 agcctatgattgaacatgtcgtgcaatttcgtgc-ttgaatatgtcgggctatttagcaacgctctt 15579432  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 48149999 - 48150071
Alignment:
Q  51 agcctatgattgaatgtgtcgtacaatttcgtgcattgactctgtcggactatttagcaacactcttaaattat 124  Q
    ||||||||| ||||  |||||| ||||||||||| |||| ||||| || |||||||||||| ||||| ||||||    
T  48149999 agcctatgactgaacatgtcgtgcaatttcgtgc-ttgaatctgttgggctatttagcaacgctctttaattat 48150071  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 42439985 - 42439926
Alignment:
Q  51 agcctatgattgaatgtgtcgtacaatttcgtgcattgactctgtcggactatttagcaac 111  Q
    ||||||||| ||||  |||||| ||||||||||| |||| |||||||| ||||||||||||    
T  42439985 agcctatgactgaacatgtcgtgcaatttcgtgc-ttgaatctgtcgggctatttagcaac 42439926  T

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