View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1090_low_23 (Length: 260)
Name: NF1090_low_23
Description: NF1090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1090_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 20519847 - 20519616
Alignment:
| Q |
1 |
ttctctgttattctgtttctaacttatcagagaacctacattaaacttataagtatataagctagttgttaaaatactcatggtggcatggttattaagc |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
20519847 |
ttctctgttattctgtttctaacttattagagaacctacattaaacttataagtatataagctagtagttaaaatactcatggtgacatggttattaagc |
20519748 |
T |
|
| Q |
101 |
tgatttcatgttttctcttatataagtacttaaagaaaacacttatccgaactatctcaattgtgaagtaacttagcctagacaaattaaacaattacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20519747 |
tgatttcatgttttctcttatataagtacttaaagaaaacacttatccgaactatctcaattgtgaagtaacttagcctagacaaattaaacaattacat |
20519648 |
T |
|
| Q |
201 |
gtacactcccaagtcccaacctcaaacaaaat |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
20519647 |
gtacactcccaagtcccaacctcaaacaaaat |
20519616 |
T |
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