View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1090_low_24 (Length: 252)
Name: NF1090_low_24
Description: NF1090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1090_low_24 |
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| [»] scaffold0339 (2 HSPs) |
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Alignment Details
Target: scaffold0339 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: scaffold0339
Description:
Target: scaffold0339; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 15313 - 15091
Alignment:
| Q |
30 |
atatgtattatggtgaacaaaatcattcaatttaaggaattaacatgaaaaataaatttcatatcaaataatgcacattacctgtttctttggtggatga |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15313 |
atatgtattatggtgaacaaaatcattcaatttaaggaattaacatgaaaaatgaatttcatatcaaataatgcacattacctgtttctttggtggatga |
15214 |
T |
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| Q |
130 |
actaatgacaccttgtttctcaagtctcttctttctatctttctttactttttccaaaagttcaacatcatcatctgcttcaagtattgcagcattagca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15213 |
actaatgacaccttgtttctcaagtctcttctttctatctttctttactttttccaaaagttcaacatcatcatctgcttcaagtattgcagcattagca |
15114 |
T |
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| Q |
230 |
tcaaacaaacccttaccactcaa |
252 |
Q |
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||||||||||||||||||||||| |
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| T |
15113 |
tcaaacaaacccttaccactcaa |
15091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 30 - 189
Target Start/End: Original strand, 3157 - 3316
Alignment:
| Q |
30 |
atatgtattatggtgaacaaaatcattcaatttaaggaattaacatgaaaaataaatttcatatcaaataatgcacattacctgtttctttggtggatga |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
3157 |
atatgtattatggtgaacaaaatcattcaatttaaggaattaacatgaaaaataaatttcatatcaaataatgcacactacctgtttctttggtggagga |
3256 |
T |
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| Q |
130 |
actaatgacaccttgtttctcaagtctcttctttctatctttctttactttttccaaaag |
189 |
Q |
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| T |
3257 |
actaatgacaccttgtttctcaagtctcttttttctatctttctttactttttccaaaag |
3316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 30 - 189
Target Start/End: Original strand, 47273932 - 47274091
Alignment:
| Q |
30 |
atatgtattatggtgaacaaaatcattcaatttaaggaattaacatgaaaaataaatttcatatcaaataatgcacattacctgtttctttggtggatga |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
47273932 |
atatgtattatggtgaacaaaatcattcaatttaaggaattaacatgaaaaataaatttcatatcaaataatgcacactacctgtttctttggtggagga |
47274031 |
T |
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| Q |
130 |
actaatgacaccttgtttctcaagtctcttctttctatctttctttactttttccaaaag |
189 |
Q |
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| T |
47274032 |
actaatgacaccttgtttctcaagtctcttttttctatctttctttactttttccaaaag |
47274091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 21012637 - 21012717
Alignment:
| Q |
112 |
tgtttctttggtggatgaactaatgacaccttgtttctcaagtctcttctttctatctttctttactttttccaaaagttc |
192 |
Q |
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||||||||||||||| ||||| |||| || |||||||||||||| || ||| |||| ||||||||||||||||||||||| |
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| T |
21012637 |
tgtttctttggtggaggaactgatgaaacgatgtttctcaagtctattttttatatccttctttactttttccaaaagttc |
21012717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 21012551 - 21012592
Alignment:
| Q |
52 |
tcattcaatttaaggaattaacatgaaaaataaatttcatat |
93 |
Q |
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| T |
21012551 |
tcattcaatttaaggaattaacataaaaaatgaatttaatat |
21012592 |
T |
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