View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1090_low_3 (Length: 581)
Name: NF1090_low_3
Description: NF1090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1090_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 29 - 472
Target Start/End: Complemental strand, 1520554 - 1520111
Alignment:
| Q |
29 |
agcaccaatgttaatgaatcatatggagatggtcttgacaaagctttagccaaagcttcaatcagaaataacaaaacggtgataattgctatggtaaata |
128 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1520554 |
agcacctatgttaatgaatcatatggagatggtcttgacaaagctttagccaaagcttcaatcagaaataacaaaacggtgataattgctatggtaaata |
1520455 |
T |
|
| Q |
129 |
aggcttatgtagaacaagatgtaaatggtgataccatcactatgtttgatctatttttaagcagtttttggcttggagaaggaacaagatctttgattga |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1520454 |
aggcttatgtagaacaagatgtaaatggtgataccatcactatgtttgatctatttttaagcagtttttggcttggagaaggaacaagatctttgattga |
1520355 |
T |
|
| Q |
229 |
taatcttcttattgtagccgttgatcaaacggcctacgatcgatgtcaatttttgaggttgaattgctataaattggagaccgatggtgttgattttgaa |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1520354 |
taatcttcttattgtagccgttgatcaaacggcctacgatcgatgtcaatttttgaggttgaattgctataaattggagacagatggtgttgattttgaa |
1520255 |
T |
|
| Q |
329 |
ggtgaaaaaatctacatgtctcaagatttcatcaatatgatgtggagaagaacttctttcctcctggaagttctaaaacatggctacaacttcattttta |
428 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1520254 |
ggtgaaaaaatctacatgtctcaagatttcatcaatatgatgtggagaaggacttctttcctcctggaagttctaaaacatggctacaacttcattttta |
1520155 |
T |
|
| Q |
429 |
cggtaagtttctttattgtgaatttggatgacacaatattgttg |
472 |
Q |
| |
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||||||||||||||| ||||||||||||||| ||||| |||||| |
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| T |
1520154 |
cggtaagtttctttagtgtgaatttggatgagacaattttgttg |
1520111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 33 - 438
Target Start/End: Complemental strand, 1516353 - 1515948
Alignment:
| Q |
33 |
ccaatgttaatgaatcatatggagatggtcttgacaaagctttagccaaagcttcaatcagaaataacaaaacggtgataattgctatggtaaataaggc |
132 |
Q |
| |
|
||||| |||||||| ||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| || || |
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|
| T |
1516353 |
ccaatattaatgaagcatatggtgatggacttgacaaagctttggccaaagcttcaatgggaaataacaaaacggtgataattgctatagtaaacaaagc |
1516254 |
T |
|
| Q |
133 |
ttatgtagaacaagatgtaaatggtgataccatcactatgtttgatctatttttaagcagtttttggcttggagaaggaacaagatctttgattgataat |
232 |
Q |
| |
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||| |||||||||||||||| |||||| || | || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1516253 |
ttacgtagaacaagatgtaatgggtgatgccgttaccatgtttgatctatttttaagcagcttttggcttggagaaggaacaagatctttgattgataac |
1516154 |
T |
|
| Q |
233 |
cttcttattgtagccgttgatcaaacggcctacgatcgatgtcaatttttgaggttgaattgctataaattggagaccgatggtgttgattttgaaggtg |
332 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||| |
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|
| T |
1516153 |
cttctcatcgtagccgttgatcaaacggcttacgatcgatgccaatttttgaggttgaattgctatagattggaaacatatggtgttgattttggaggtg |
1516054 |
T |
|
| Q |
333 |
aaaaaatctacatgtctcaagatttcatcaatatgatgtggagaagaacttctttcctcctggaagttctaaaacatggctacaacttcatttttacggt |
432 |
Q |
| |
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| ||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||||||||||| ||| || ||||| ||||| ||||| |
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| T |
1516053 |
agaaaatatacatgtctcaagaattcatcaagatgatgtggagaaggacttctttcctcttggaagttctaaaacgtggatataacttaattttcacggt |
1515954 |
T |
|
| Q |
433 |
aagttt |
438 |
Q |
| |
|
| |||| |
|
|
| T |
1515953 |
acgttt |
1515948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 48 - 443
Target Start/End: Complemental strand, 1524501 - 1524106
Alignment:
| Q |
48 |
catatggagatggtcttgacaaagctttagccaaagcttcaatcagaaataacaaaacggtgataattgctatggtaaataaggcttatgtagaacaaga |
147 |
Q |
| |
|
||||| |||||| ||||| | |||||| ||||||||||||| ||||||||||||| | || |||||| | |||||||| ||||||||||||||||| |
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|
| T |
1524501 |
catatcgagatgttcttggaacagctttgtccaaagcttcaatgggaaataacaaaacattaattattgctgtagtaaataaagcttatgtagaacaaga |
1524402 |
T |
|
| Q |
148 |
tgtaaatggtgataccatcactatgtttgatctatttttaagcagtttttggcttggagaaggaacaagatctttgattgataatcttcttattgtagcc |
247 |
Q |
| |
|
|||||| |||||| ||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||| |||| || |||||| |
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|
| T |
1524401 |
tgtaaagggtgatcccaccaccatgtttgatctatttttaaacagcttttggcttggagaaggaacaagatctttggttgataatattctcatcgtagcc |
1524302 |
T |
|
| Q |
248 |
gttgatcaaacggcctacgatcgatgtcaatttttgaggttgaattgctataaattggagaccgatggtgttgattttgaaggtgaaaaaatctacatgt |
347 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||||||||||| |||||||||| | ||||||| |
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|
| T |
1524301 |
gttgatcaaacggcctacgatcgatgccaatttttgaagttgaattgttataaattggagacagatggtgttgattttggaggtgaaaaactttacatgt |
1524202 |
T |
|
| Q |
348 |
ctcaagatttcatcaatatgatgtggagaagaacttctttcctcctggaagttctaaaacatggctacaacttcatttttacggtaagtttcttta |
443 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||| |||||| ||||| ||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
1524201 |
ctcaagatttcatcaatatgatgtggacaaggacttttttccttttggaaattctaaaacgtggctacaacttcatttttacggtaagtttattta |
1524106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 29 - 443
Target Start/End: Complemental strand, 16644782 - 16644368
Alignment:
| Q |
29 |
agcaccaatgttaatgaatcatatggagatggtcttgacaaagctttagccaaagcttcaatcagaaataacaaaacggtgataattgctatggtaaata |
128 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| |
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|
| T |
16644782 |
agcaccaatattaatgaatcatacagagatggtcttgacaaagctttagccaaagcttcaatgagaaattacaaaacggtgataattgctataataaata |
16644683 |
T |
|
| Q |
129 |
aggcttatgtagaacaagatgtaaatggtgataccatcactatgtttgatctatttttaagcagtttttggcttggagaaggaacaagatctttgattga |
228 |
Q |
| |
|
| ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16644682 |
aagcttatgtagaacaagatgtaaagggtgatgccatcaccatgtttgatctatttttaagcagcttttggcttggagaaggaacaagatctttgattga |
16644583 |
T |
|
| Q |
229 |
taatcttcttattgtagccgttgatcaaacggcctacgatcgatgtcaatttttgaggttgaattgctataaattggagaccgatggtgttgattttgaa |
328 |
Q |
| |
|
||| ||||| |||||||| ||||||||||||||||| |||||||| |||||| | |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16644582 |
taaccttctcattgtagctgttgatcaaacggcctatgatcgatgccaatttctaaggttgaattgctataaattggagacagatggtgttgattttggt |
16644483 |
T |
|
| Q |
329 |
ggtgaaaaaatctacatgtctcaagatttcatcaatatgatgtggagaagaacttctttcctcctggaagttctaaaacatggctacaacttcattttta |
428 |
Q |
| |
|
|| |||||| ||| ||||||| ||||||| |||||||||||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||||||| |
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|
| T |
16644482 |
ggggaaaaactcttcatgtctaaagattttatcaatatgatgtggagaaggacttttttccttttggaagttctaaaacgtggctacaacttcattttta |
16644383 |
T |
|
| Q |
429 |
cggtaagtttcttta |
443 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
16644382 |
cggtaagtttcttta |
16644368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 101 - 334
Target Start/End: Original strand, 31791703 - 31791928
Alignment:
| Q |
101 |
aaaacggtgataattgctatggtaaataaggcttatgtagaacaagatgtaaatggtgataccatcactatgtttgatctatttttaagcagtttttggc |
200 |
Q |
| |
|
|||||||||||||||||| | |||||||| ||||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||||| ||||||| |
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|
| T |
31791703 |
aaaacggtgataattgctgtagtaaataaagcttatgtagaacaagatgtaaagggtgatgccattaccatgtttgatctatttttaagcagcttttggc |
31791802 |
T |
|
| Q |
201 |
ttggagaaggaacaagatctttgattgataatcttcttattgtagccgttgatcaaacggcctacgatcgatgtcaatttttgaggttgaattgctataa |
300 |
Q |
| |
|
||||||||||||| | |||||||||||||| ||||| ||||||||| |||||| ||||| ||||| ||||||||||| |||||| ||||||| |
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|
| T |
31791803 |
ttggagaaggaacccggtctttgattgataaccttctcattgtagccattgatcgaacgg--------cgatgccaatttttgagattgaatagctataa |
31791894 |
T |
|
| Q |
301 |
attggagaccgatggtgttgattttgaaggtgaa |
334 |
Q |
| |
|
||||||||| | ||||||||||||| ||||||| |
|
|
| T |
31791895 |
attggagacataaggtgttgattttggaggtgaa |
31791928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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