View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1090_low_30 (Length: 231)

Name: NF1090_low_30
Description: NF1090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1090_low_30
NF1090_low_30
[»] chr8 (2 HSPs)
chr8 (1-83)||(21560786-21560867)
chr8 (1-64)||(11426818-11426880)
[»] chr7 (1 HSPs)
chr7 (1-83)||(17034438-17034519)
[»] chr3 (2 HSPs)
chr3 (1-83)||(43264857-43264938)
chr3 (1-64)||(26216771-26216833)
[»] chr2 (3 HSPs)
chr2 (1-83)||(37901033-37901114)
chr2 (1-64)||(5967504-5967566)
chr2 (7-51)||(652612-652656)
[»] chr4 (1 HSPs)
chr4 (1-64)||(5432166-5432228)
[»] chr5 (1 HSPs)
chr5 (1-34)||(10185023-10185056)


Alignment Details
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 21560786 - 21560867
Alignment:
Q  1 atagagattgtagttaatggtttaaatttatttttcttgaattgtttttcttaaatgaattgtcctaccctttatcatcaata 83  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  21560786 atagagattgtagttaatggtttaaatttatttttattgaattgtttttctt-aatgaattgtcctaccctttatcatcaata 21560867  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 11426818 - 11426880
Alignment:
Q  1 atagagattgtagttaatggtttaaatttatttttcttgaattgtttttcttaaatgaattgtc 64  Q
    |||||||| |||||||||||||| ||||||||||  ||||||  |||||||| |||||||||||    
T  11426818 atagagatcgtagttaatggttttaatttattttggttgaatcatttttctt-aatgaattgtc 11426880  T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 17034519 - 17034438
Alignment:
Q  1 atagagattgtagttaatggtttaaatttatttttcttgaattgtttttcttaaatgaattgtcctaccctttatcatcaata 83  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  17034519 atagagattgtagttaatggtttaaatttatttttgttgaattgtttttctt-aatgaattgtcctaccctttatcatcaata 17034438  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 43264857 - 43264938
Alignment:
Q  1 atagagattgtagttaatggtttaaatttatttttcttgaattgtttttcttaaatgaattgtcctaccctttatcatcaata 83  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  43264857 atagagattgtagttaatggtttaaatttatttttgttgaattgtttttctt-aatgaattgtcctaccctttatcatcaata 43264938  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 26216833 - 26216771
Alignment:
Q  1 atagagattgtagttaatggtttaaatttatttttcttgaattgtttttcttaaatgaattgtc 64  Q
    |||||||| |||||||||||||| ||||||||||  ||||||  |||||||| |||||||||||    
T  26216833 atagagatcgtagttaatggttttaatttattttggttgaatcatttttctt-aatgaattgtc 26216771  T

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Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 37901033 - 37901114
Alignment:
Q  1 atagagattgtagttaatggtttaaatttatttttcttgaattgtttttcttaaatgaattgtcctaccctttatcatcaata 83  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  37901033 atagagattgtagttaatggtttaaatttatttttgttgaattgtttttctt-aatgaattgtcctaccctttatcctcaata 37901114  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5967504 - 5967566
Alignment:
Q  1 atagagattgtagttaatggtttaaatttatttttcttgaattgtttttcttaaatgaattgtc 64  Q
    ||||||||||||||||||||||| ||||||||||  ||||||  |||||||| |||||||||||    
T  5967504 atagagattgtagttaatggttttaatttattttggttgaatcatttttctt-aatgaattgtc 5967566  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 652612 - 652656
Alignment:
Q  7 attgtagttaatggtttaaatttatttttcttgaattgtttttct 51  Q
    ||||||| ||||||||||||||||||||| ||||||  |||||||    
T  652612 attgtagataatggtttaaatttatttttgttgaatcctttttct 652656  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 5432228 - 5432166
Alignment:
Q  1 atagagattgtagttaatggtttaaatttatttttcttgaattgtttttcttaaatgaattgtc 64  Q
    |||||||| |||||||||||||| ||||||||||  ||||||  |||||||| |||||||||||    
T  5432228 atagagatcgtagttaatggttttaatttattttggttgaatcatttttctt-aatgaattgtc 5432166  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10185056 - 10185023
Alignment:
Q  1 atagagattgtagttaatggtttaaatttatttt 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  10185056 atagagattgtagttaatggttttaatttatttt 10185023  T

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