View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1090_low_4 (Length: 542)
Name: NF1090_low_4
Description: NF1090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1090_low_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 80 - 542
Target Start/End: Original strand, 20519874 - 20520334
Alignment:
| Q |
80 |
caagattttcaatcactatagcaattgcagtggtgttgcagtccttgatgttgtagagaatcgtggttaagtatagcttatgcggtctcaattgcactgt |
179 |
Q |
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| T |
20519874 |
caaggttttcaatcactatagcaattgcagtggtgttgcagtcgttgatgttgtagagaatcgtggttaagtatagcttatgcggtctcaattgcactgt |
20519973 |
T |
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| Q |
180 |
gactgtggttttcatgtaccggccctgcttttaacagttagtactgttagtctcggtatttaggactgaaaaggtagatgaaaggaaatttagggaggct |
279 |
Q |
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| T |
20519974 |
gactgtggttttcatgtaccggccctgcttttaacagttagtagtgttagtctcggtatttaggactgacaaggtagatgaaaggaaatttagggaggcg |
20520073 |
T |
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| Q |
280 |
gaggagagaacccgtctctttctctcaaatacttgtaaatgagggagtgataaaattctcattatatcattctagatttcttgttctttgatgcttatca |
379 |
Q |
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| T |
20520074 |
gaggagagaacccgtctctttctctcaaatacttgtaaatgagggagcgataaaattctcattatatcattctagatttcttgttctttgatgcttatca |
20520173 |
T |
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| Q |
380 |
tgtagccttcttaactctttcctactagtaattaggaactaatcacaacagtgtttgaaggattaatcgagttgatcaatggaaacaaaatttgctagaa |
479 |
Q |
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| T |
20520174 |
tgtagccttcttaactctttgctactagtaattaggaactaatcaca--agtgtttgaaggattaatcgagttgatcaatggaaacaaaatttgctagaa |
20520271 |
T |
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| Q |
480 |
gattaaacactttttcacttgaaaagtgctagaagattatccaaagataaagcttctgttatt |
542 |
Q |
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| T |
20520272 |
gattaaacactttttcacttgaaaagtgctagaagattatcaaaagataaagcttctgttatt |
20520334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 30550052 - 30550137
Alignment:
| Q |
3 |
gtttattctttcaaactcccaaatccttttgaaagaaactgtgtatttataatttttgtgaatataggtaggtaaatcaagatttt |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30550052 |
gtttattctttcaaactcccaaatccttttgaaagaaactgtgtatttataatttttgtgaatgtaggtaggtaaatcaagatttt |
30550137 |
T |
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