View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1090_low_5 (Length: 520)
Name: NF1090_low_5
Description: NF1090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1090_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 83 - 424
Target Start/End: Complemental strand, 37603285 - 37602944
Alignment:
| Q |
83 |
cataggcctaaaagatggaactgtgattctaagtgaaggagggccttctggtaatttagccaaagaatctataaaagtaggccattgcatacaaggtgtt |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37603285 |
cataggcctaaaagatggaactgtgattctaagtgaaggagggccttctggtaatttagccaaagaatctataaaagtaggccattgcatacaaggtgtt |
37603186 |
T |
|
| Q |
183 |
atgctaaaatctaaaatatgtacccttttgaatcccttaattgacttgaaaatttcattgttggaagcacaaaaaccaaacctatgccaaggaattaaat |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37603185 |
atgctaaaatctaaaatatgtacccttttgaatcccttaattgacttgaaaatttcattgttggaagcacaaaaaccaaacctatgccaaggaattaaat |
37603086 |
T |
|
| Q |
283 |
caacatacccggcgagttcggtaacggacatcaaccttctttgaattgtgtagttacttcctttgaaattcattgaagtaggacaaatccttgaagctct |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37603085 |
caacatacccggcgagttcggtaacggacatcaatcttctttgaattgtgtagttacttcctttgaaattcattgaagtaggacaaatccttgaagctct |
37602986 |
T |
|
| Q |
383 |
agagattaatgctctcagaaaccatgaagtgagtctttggtt |
424 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
37602985 |
agagattaatgctcttagaaaccaggaagtgagtctttggtt |
37602944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University